An initial release for the pediatric cancer atlas image profiling project.
What's Changed
- Add main readme and platemaps by @jenna-tomkinson in #1
- Add loaddata code and CSVs by @jenna-tomkinson in #2
- Perform IC and extract QC metrics by @jenna-tomkinson in #3
- Fix loaddata bug by @jenna-tomkinson in #4
- Refactor IC and add image QC by @jenna-tomkinson in #5
- Perform feature extraction and preprocessing by @jenna-tomkinson in #6
- Rerun bulk normalization with U2O2 cell and generate single-cell UMAPs by @jenna-tomkinson in #7
- Update scripts folder names and bash scripts by @jenna-tomkinson in #10
- Update and confirm pe2loaddata works by @jenna-tomkinson in #12
- Pairwise compare for optimization by @jaceybronte in #11
- Adding boxplots to visualize optimization by @jaceybronte in #14
- Generate QC report by @jenna-tomkinson in #15
- Rerun and optimize QC by @jenna-tomkinson in #16
- Update for hpc and fix issues by @jenna-tomkinson in #19
- Explore COG prioritization by @gwaybio in #18
- Add
CITATION.cfffile and supporting changes by @d33bs in #20
New Contributors
- @jenna-tomkinson made their first contribution in #1
- @jaceybronte made their first contribution in #11
- @gwaybio made their first contribution in #18
- @d33bs made their first contribution in #20
Full Changelog: https://github.com/WayScience/pediatric_cancer_atlas_profiling/commits/v0.0.1
Contributors
d33bs, gwaybio, and 2 other contributors