Post documentation website publish updates #5

	name: website

	# build the documentation whenever there are new commits on main
	on:
	push:
	branches:
	- main
	# Alternative: only build for tags.
	# tags:
	# - '*'

	# security: restrict permissions for CI jobs.
	permissions:
	contents: read

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5
	fail-fast: false
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- uses: actions/checkout@v4
	with:
	persist-credentials: false
	- name: Set up Anaconda
	uses: conda-incubator/setup-miniconda@v3
	with:
	activate-environment: newestfenics
	environment-file: conda_env_no_cuda.yml
	python-version: 3.9.18
	auto-activate-base: false
	- name: Install other dependencies
	run: \|
	conda install -c bioconda tbb=2020.2
	pip install git+https://github.com/g-peery/sanity_research_utils.git git+https://github.com/g-peery/moola.git
	pip install -e .
	pip install pdoc

	# build your documentation into docs/.
	- run: pdoc gel --math -o docs/

	- uses: actions/upload-pages-artifact@v3
	with:
	path: docs/

	# Deploy the artifact to GitHub pages.
	# This is a separate job so that only actions/deploy-pages has the necessary permissions.
	deploy:
	needs: build
	runs-on: ubuntu-latest
	permissions:
	pages: write
	id-token: write
	environment:
	name: github-pages
	url: ${{ steps.deployment.outputs.page_url }}
	steps:
	- id: deployment
	uses: actions/deploy-pages@v4

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