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<code>PDtoMSstatsTMTFormat</code> Fails with CHIMERYS Data from Proteome Discoverer

Status: Open.

#87 In Vitek-Lab/MSstatsTMT;

· SamThilmany opened on Mar 19, 2025

Error in MaxQuant annotation file

Status: Open.

#83 In Vitek-Lab/MSstatsTMT;

· Maithy15 opened on Oct 19, 2024

Exporting the protein-level data

Status: Open.

#78 In Vitek-Lab/MSstatsTMT;

· Bicun1909 opened on Nov 20, 2023

MaxQtoMSstatsTMTFormat fails

bug

Status: Open.

#76 In Vitek-Lab/MSstatsTMT;

· gprosales opened on Oct 2, 2023

Fraction variable in PD annotation

Status: Open.

#74 In Vitek-Lab/MSstatsTMT;

· Tahyne opened on Aug 8, 2023

.fitModelTMT calls wrong model if multiple subject and mixtures but one technical replicate

bug

Status: Open.

#72 In Vitek-Lab/MSstatsTMT;

· devonjkohler opened on Apr 25, 2023

Norm channel doesn't handle capitalization correctly.

bug

Status: Open.

#69 In Vitek-Lab/MSstatsTMT;

· devonjkohler opened on Mar 3, 2023

Fractionated Data Not Handled With Data Frame Input to proteinSummarization()

Status: Open.

#66 In Vitek-Lab/MSstatsTMT;

· dnusinow opened on Jan 19, 2023

difficulties in creating annotation.pd

Status: Open.

#50 In Vitek-Lab/MSstatsTMT;

· me37uday opened on Nov 5, 2021

check if .getRunsMedian is OK

Status: Open.

#41 In Vitek-Lab/MSstatsTMT;

· mstaniak opened on Sep 24, 2021

Interface for outputs of major functions

Status: Open.

#34 In Vitek-Lab/MSstatsTMT;

· mstaniak opened on Jul 29, 2021