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generate figures for the paper Quarto Publish #45: Commit ca03651 pushed by bastienchassagnol
2s master
master
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add pca and pls-da projections Quarto Publish #44: Commit ebf934a pushed by bastienchassagnol
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Add comprehensive reportig of differential analyses Quarto Publish #43: Commit 9447e2d pushed by bastienchassagnol
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pages build and deployment pages-build-deployment #9: by github-pages bot
33s gh-pages
gh-pages
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web generation, including deseq2 and logcpm pipelines, v2 Quarto Publish #42: Commit 9064c0a pushed by bastienchassagnol
17m 28s master
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17m 28s
web generation, including deseq2 and logcpm pipelines Quarto Publish #41: Commit 8920afb pushed by bastienchassagnol
20m 37s master
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correct Heatmap rendering, and functionalised reactable objects Quarto Publish #40: Commit 676a75f pushed by bastienchassagnol
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add Heatmaps for logCPM, and Deseq2 pipelines Quarto Publish #39: Commit ab262f3 pushed by bastienchassagnol
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combined differential analyses, saved as SummarizedExperiment objects Quarto Publish #38: Commit 00ddbb6 pushed by bastienchassagnol
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changing the approach for calling indiviudal contrasts Quarto Publish #37: Commit d18b0e0 pushed by bastienchassagnol
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first test deseq2 Quarto Publish #36: Commit a77cace pushed by bastienchassagnol
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add density plots Quarto Publish #35: Commit bb2b65a pushed by bastienchassagnol
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add logCPM transformation pipeline + density_plots as ggridges Quarto Publish #34: Commit b492d23 pushed by bastienchassagnol
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pages build and deployment pages-build-deployment #8: by github-pages bot
28s gh-pages
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web generation, trying different simmilarity scores thresholds Quarto Publish #33: Commit b9793ad pushed by bastienchassagnol
4m 6s master
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pages build and deployment pages-build-deployment #7: by github-pages bot
56s gh-pages
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web generation, after trimming spurious duplicated samples Quarto Publish #32: Commit b0d8421 pushed by bastienchassagnol
17m 8s master
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data cleaning, removal of old datasets, and debugging of drug-drug ne… Quarto Publish #31: Commit e4f785a pushed by bastienchassagnol
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after trimming duplicated samples + add Reactable stylesheet Quarto Publish #30: Commit 767ef35 pushed by bastienchassagnol
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add design experiments for EdgeR, and remove scripts for computing dr… Quarto Publish #29: Commit 366f82e pushed by bastienchassagnol
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rerun methods and data management pipeline + evaluate Heatmap results… Quarto Publish #28: Commit 29cb216 pushed by bastienchassagnol
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use github as a boss to track, and retrieve!! older versions of the s… Quarto Publish #27: Commit 912b753 pushed by bastienchassagnol
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add quality controls heatmaps Quarto Publish #26: Commit 0284c29 pushed by bastienchassagnol
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pages build and deployment pages-build-deployment #6: by github-pages bot
25s gh-pages
gh-pages
25s
web generation after freeze:true option Quarto Publish #25: Commit 7f596d8 pushed by bastienchassagnol
2m 46s master
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2m 46s