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Does phastCons on windows of the MSA identify more conserved elements vs. phastCons on whole MSA?

Status: Open.

#6 In UCSantaCruzComputationalGenomicsLab/phast;

· sosie101 opened on Apr 24, 2025

Is the bed file of PhastCons generated based on the values in the wig file？

Status: Open.

#5 In UCSantaCruzComputationalGenomicsLab/phast;

· helloworldABCD1234 opened on Jan 2, 2025

The wig generated by phastcon does not match the corresponding bed，Do gaps and repetitive sequences in maf also receive ratings？

Status: Open.

#4 In UCSantaCruzComputationalGenomicsLab/phast;

· helloworldABCD1234 opened on Dec 3, 2024

PhastCons generates a 0-1 score wig file. What is the conservative score? Do you have specific standards

Status: Open.

#3 In UCSantaCruzComputationalGenomicsLab/phast;

· helloworldABCD1234 opened on Dec 3, 2024

option to over-ride same srcName error?

Status: Open.

#2 In UCSantaCruzComputationalGenomicsLab/phast;

· sorrywm opened on May 30, 2019