chore: Install numpy and cyvcf2 not from binary #145

	name: Integration tests

	on: [push]

	jobs:
	test:
	runs-on: ubuntu-24.04
	strategy:
	matrix:
	python-version: [ '3.8', '3.9', '3.10' ]

	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	cache: pip
	- name: Install dependencies
	run: \|
	sudo apt-get update
	sudo apt-get --assume-yes install build-essential libcurl4-openssl-dev libz-dev liblzma-dev
	python -m pip install --upgrade pip
	pip install setuptools wheel
	# this is needed by pybedtools
	sudo apt-get --assume-yes install bedtools
	# install python requirements
	#pip install -r requirements.txt
	- name: Install vafator
	run: \|
	python setup.py bdist_wheel
	pip install dist/vafator-*.whl
	- name: Run integration tests
	run: \|
	make clean integration_tests

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