Coancestry superposed on admixed populations yields measures of relatedness at individual-level resolution

Reproducible data analysis for "Coancestry superposed on admixed populations yields measures of relatedness at individual-level resolution" by Danfeng Chen and John D. Storey

Provenance for this README

• File name: README.md
• Author: Danfeng Chen and John D. Storey
• Date created: 2024-12-28
• Date modified: 2025-02-25

Manuscript

Chen, D. and J. D. Storey (2024). “Coancestry superposed on admixed populations yields measures of relatedness at individual-level resolution”. bioRxiv doi:10.1101/2024.12.29.630632. https://doi.org/10.1101/2024.12.29.630632

Reproducible Analysis

Source (Rmd file)

• Human Origins (HO) study
• Admixed individuals (AMR) from the 1000 Genomes Project (TGP)
• Indian (IND) study
• HGDP study
• TGP study
• Supplementary analyses of human studies

Output (html file)

• Human Origins (HO) study
• Admixed individuals (AMR) from the 1000 Genomes Project (TGP)
• Indian (IND) study
• HGDP study
• TGP study
• Supplementary analyses of human studies

Main Software

superadmixture (Version 0.1.0): https://github.com/StoreyLab/superadmixture

Main Data and File Overview

Table of Contents

• analysis/ho/* 96MB
• analysis/amr/* 7.4MB
• analysis/ind/* 14MB
• analysis/hgdp/* 29MB
• analysis/tgp/* 123MB
• analysis/suppl/* 2.0MB
• manuscript/* 29MB

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END OF README