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In a prior PR for bakta, I mentioned that I would put together one with the light database included.

This is that image.

I copied the Dockerfile from 1.9.3-5.1-light, updated the base image and the software version arg.

The full diff:

$ diff bakta/1.9.3-5.1-light/Dockerfile bakta/1.9.4-5.1-light/Dockerfile 
1c1
< FROM mambaorg/micromamba:1.5.7 as app
---
> FROM mambaorg/micromamba:1.5.8 as app
3c3
< ARG BAKTA_VER="1.9.3"
---
> ARG BAKTA_VER="1.9.4"
7c7
< LABEL base.image="mambaorg/micromamba:1.5.7"
---
> LABEL base.image="mambaorg/micromamba:1.5.8"

Pull Request (PR) checklist:

  • Include a description of what is in this pull request in this message.
  • The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
  • Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
    • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
  • Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
    • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
  • Dockerfile includes the recommended LABELS
  • Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
  • Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

@Kincekara Kincekara merged commit 8d227f9 into master Sep 30, 2024
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@Kincekara
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Thank you for the update! I made a tiny edit in the Dockerfile (forced to remove the package cache).
The deploy link: https://github.com/StaPH-B/docker-builds/actions/runs/11111255683

@erinyoung erinyoung deleted the erin-bakta-db branch October 7, 2024 21:30
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3 participants