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@SingleR-inc

SingleR-inc

Code and resources for the SingleR method
README.md

Cell type annotation for single-cell data

This organization manages the code for the SingleR Bioconductor package and associated resources. (No, we're not really a corporation, it's just that the @SingleR handle was already taken.)

To get started, check out one or more of the links below:

Python users may also be interested in the Python implementation.

The cool logo was derived from the sticker for the package.

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  1. SingleR SingleR Public

    Clone of the Bioconductor repository for the SingleR package.

    R 192 19

  2. celldex celldex Public

    Collection of cell type reference datasets.

    R 59 7

  3. singler-py singler-py Public

    Python bindings for SingleR

    Python 12

  4. SingleRBook-base SingleRBook-base Public archive

    See https://github.com/LTLA/SingleRBook for the latest version of this content.

    TeX 11 7

  5. SingleRBook SingleRBook Public

    The package wrapping the book, for deployment via the Bioconductor build system.

    TeX 6 1

  6. singlepp singlepp Public

    Pure C++ implementation of the SingleR method for cell type annotation

    C++ 1

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