ontogpt_dissco_machine_annotation_service

Installation

pip install -r requirements.txt

Run

python service.py

or

fastapi run service.py

Configuration

The app can be configured via pydantic-settings. See here

Setting	Description	Default
log_level	log level	INFO
template_path	Path to otogpt template	habitat_template_v2.yaml
llm_model	LLM model to use	ollama/mistral

TODO: Document/Configure how to use bioportal api key

Develop

For develop, you can run it in dev mode which automatically reload changes

fastapi dev service.py