A connector that can start argo workflows from a submitted workflow file and push resulting artifacts from argo to cordra to store them as digital objects.
This is part of the FAIR workflow platform.
docker build . argo-connector .docker run -d -p 8000:8000 --env-file .env argo-connectorMake sure to set the neccessary environment variables:
| Variable name | Description | Default |
|---|---|---|
| ARGO_BASE_URL | Base URL of the Argo workflow engine | |
| ARGO_TOKEN | Authentication token for Argo | |
| CORDRA_BASE_URL | Base URL of the Cordra instance | |
| CORDRA_USER | Username for Cordra authentication | |
| CORDRA_PASSWORD | Password for Cordra authentication | |
| ARGO_DEFAULT_NAMESPACE | Default namespace for Argo workflows | "argo" |
| CORDRA_MAX_FILE_SIZE | Maximum file size for Cordra uploads (in bytes). Some Cordra backends like S3 have a fixed file size limit. This allows to skip files exeeding that limit during processing of workflow results. | 104857600 |
| AUTH_USERNAME | Basic auth username for this service, if required | None |
| AUTH_PASSWORD | Basic auth password for this service, if required | None |
| ROOT_PATH | Root path, useful if the app is behind a proxy. | None |
API documentation can be accessed at [https://localhost:8000/docs] (see https://fastapi.tiangolo.com/reference/openapi/docs/)