About PyBoolNet

PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks. The current version is available at PyBoolNet/releases.

For the manual, a reference and tutorials see the PyBoolNet manual. For bug reports and feedback do not hesitate to open issues at PyBoolNet issues or contact

• hannes.klarner@fu-berlin.de (developer)
• heike.siebert@fu-berlin.de

release notes for version 2.1 (September 2016)

• support for windows and macos
• refactored subspace2states as list_states_in_subspace and proposition2states as list_states_referenced_by_proposition
• refactored function for state and subspace conversions to state2str, state2dict, subspace2str, subspace2dict and added basic asserts
• added functions univocality_with_counterexample, faithfulness_with_counterexample and completeness_with_counterexample
• refactored the functions univocal, faithful and completeness_iterative to two univocality, faithfulness and completeness
• removed function completeness_naive from AD since it is always less efficient than completeness_iterative
• renamed module TemporalQueries to QueryPatterns for clarity
• bugfix absolute import for Python 3.x

release notes for version 2.0 (August 2016)

• added functions create_variables, create_disjoin_union to module PIs
• split function percolate_constants from module PIs into percolate_and_keep_constants and percolate_and_remove_constants for clarity
• bugfix in completeness_iterative of module AD
• moved function compute_attractors_tarjan from module STGs to module AttractorDetection
• split functions check_primes and check_smv from module MC into three functions each for counterexamples, acceptingstates and both of for clarity
• removed feature add_style_condensationgraph from module STGs
• bugfix for the computation of the condensation graph
• added the parameter LayoutEngine for drawing graphs. Possible engines: dot,neato,fdp,sfdp,circo and twopi
• added functions for the sccgraph, the condensationgraph and the HTG to module STGs
• now following the git model described in nvie.com
• refactored Utility.py in Utility\DiGraphs.py and Utility\Misc.py
• added documentation source to Docs\Sphinx
• added AttractorBasins.py, a library for visualizing basins of attraction
• added support for model checking with accepting states via NuSMV-a
• added Repository/, a folder with pre-defined networks
• added support for Python 2.x and 3.x
• added function input_combinations to module PrimeImplicants

release notes for version 1.0 (February 2016)

• first official release