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Achievements

Achievement: Pull Sharkx2Achievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx2Achievement: StarstruckAchievement: Arctic Code Vault Contributor

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SAMtoBAM/README.md

I am a genomicist interested in the evolution of genome structure and content
I primarily create tools or write repositories with lengthy explanations

Linux bash R Markdown Stars

Recent projects/pipelines/tools

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  1. MUMandCo MUMandCo Public

    MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation

    Shell 75 15

  2. PAQman PAQman Public

    PAQman is a tool for a reference-free and comprehensive evaluation of genome assemblies

    Shell 8

  3. stargraph stargraph Public

    A complete Starship and Starship-like region detection tool combining genome-graph based and starfish detection

    Shell 5 2

  4. fusemblr fusemblr Public

    fusemblr is a pipeline wrapper designed for the assembly of complex genomes using nanopore reads and paired-end illumina

    Shell 4

  5. PhasedDiploidGenomeAssemblyPipeline PhasedDiploidGenomeAssemblyPipeline Public

    Using de-novo assembly and read-phasing to assemble reference-free diploid genomes

    R 24 2

  6. aneuploidy_detection aneuploidy_detection Public

    Aneuploidy detection method for detecting both 'simple' and 'complex' aneuploidies

    Shell 5 1