Efficient-Sequence-Analyzer

A wrapper for Expasy Translate and EMBOSS Needle, automating the six-frame translation and pairwise alignment feedback loop. Available as both a command-line tool and published web app!

NOTE: If you're only interested in the source code, you can clone the cli-tool branch with git clone -b cli-tool --single-branch https://github.com/Rohak72/Efficient-Sequence-Analyzer.git.

Tech Stack:

• Backend: Python, FastAPI, SQLite (via SQLAlchemy ORM)
• Frontend: React, Node.js, Tailwind CSS
• Deployment: AWS Lambda, API Gateway, Vercel Hosting
• Async Processors: AWS S3 + Worker Lambda + DynamoDB

Future Plans:

• ✅ Build async processes to ingest compute-expensive alignment tasks within API Gateway's 30-sec limit.
• ⏱ Overhaul the real-time S3 database idea altogether to reduce request overload issues.
• ⏱︎ Incorporate Litestream to handle concurrent processes with write-ahead logging to a designated S3 bucket.

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