testing-artefacts-pharmaco-multipath

About

Testing artefacts in pharmaceutically-controlled multi-pathogen systems: a modelling study. The project is mainly run by Priesemann Group at MPIDS, under the supervision of Viola Priesemann. Main contributors:

File Structure

Directories

• testing-artefacts-pharmaco-multipath: all the scripts are inside this directory. Note: adding new scripts? Don't forget to update the init.py
• results:
• notebooks: all jupyter notebooks are here

Installation

From sources

The sources for icomo can be downloaded from the Github repo

Clone the public repository:

$ git clone https://github.com/Priesemann-Group/testing-artefacts-pharmaco-multipath.git

or (better, requires ssh key setup)

$ git clone git@github.com:Priesemann-Group/testing-artefacts-pharmaco-multipath.git

Enter the directory and install with pip:

$ cd testing-artefacts-pharmaco-multipath
$ pip install -e .

This enables you to edit the code and have the changes directly available in your python environment.

You might also want to install jupyterlab to run the notebooks:

$ pip install jupyterlab

Development notes

Add dependencies

Dependencies are listed in pyproject.toml. To add a new dependency, add it to the list in pyproject.toml and run

$ pip install -e .

to install the new dependencies in your environment.