Pinned Loading

1. BulkOmicsTools BulkOmicsTools Public

   Perform PCA, clustering and correlation analyses of the bulk omics data.

   Jupyter Notebook

2. CoexpressDeconvolve CoexpressDeconvolve Public

   Perform Visium Standard Definition (SD) spot deconvolution into putative single cells using distance-based gene clustering and cell type formulation.

   Jupyter Notebook 6

3. TCRscape TCRscape Public

   TCRscape - a tool for simultaneous multimodal gene expression and clonotype analysis of single T-cells profiled via the BD Rhapsody system.

   Jupyter Notebook 4 1

4. Visium-Deconvolution-based-clustering Visium-Deconvolution-based-clustering Public

   Convert your STDeconvolve-generated and EnrichR-decoded topics into Seurat spatial clustering information via AUCell

   Jupyter Notebook

5. ErythroOrigin ErythroOrigin Public

   Predict human Erythroid cell tissue of origin using the BD Rhapsody single cell Immune responce panel gene expression data

   Jupyter Notebook