1.1.1

This release fixes a major bug in QSIRecon's handling of multi-session and multi-run datasets. When processing multiple sessions or runs in a single QSIRecon call, the reconstruction workflow was being modified in place, such that the first session/run was processed correctly, but subsequent sessions/runs were processed with global default values. This bug primarily affected custom reconstruction workflows. The built-in workflows should be largely unaffected.

What's Changed

🎉 Exciting New Features

• Parcellate scalars and write out brain mask by @tsalo in #251
• Use deltas in DIPY interfaces by @tsalo in #259

🐛 Bug Fixes

• Upgrade DIPY, pyAFQ by @36000 in #235
• Fix handling of atlas labels with spaces and test custom atlas handling by @tsalo in #248
• Remove background label from atlases before calculating connectivity by @tsalo in #249
• Fix collection of longitudinal anatomical outputs by @tsalo in #253
• Write out ACPC-space scalars from TORTOISE node if estimate_mapmri is False by @tsalo in #254
• Prevent workflow spec dictionary from being modified in place during build process by @tsalo in #263

Other Changes

• Update boilerplate.bib for mrtrix reference by @chiuhoward in #239
• Update descriptions of scalar map parameters by @tsalo in #225
• Generate figure showing scalar maps by @tsalo in #246
• Remove outdated admonition by @tsalo in #257
• Add missing workflows to "which workflows are appropriate" table by @tsalo in #258
• Fix table borders by @tsalo in #260
• Add unused plot_reports input to _KurtosisReconstructionInputSpec by @tsalo in #262

New Contributors

• @36000 made their first contribution in #235

Full Changelog: 1.1.0...1.1.1