This repository contains various scripts from omnesres.com.

cdf.py will make cdf plots with matplotlib and goes with this post: http://www.omnesres.com/tools/cdf/

kaplan.py will make Kaplan-Meier plots with Python and goes with this post: http://www.omnesres.com/tools/kaplan/ and this youtube video: https://www.youtube.com/watch?v=cPEXL1YuhAk

proteomicsdb.py will download data from proteomicsdb and parse for phosphate modifications. It goes with this post: http://www.omnesres.com/research/proteomicsdb/ and this video: https://www.youtube.com/watch?v=to8-v0kOr4w

neoantigens.py will parse MAF files and identify peptides that are altered (neoantigens). A post is available here: http://www.omnesres.com/research/neoantigens/ and a video is available here: https://www.youtube.com/watch?v=y2CU352YlsU

find_adaptor.py is a short script for finding small RNA adaptor sequences. Post available here: http://www.omnesres.com/tools/adaptors/ video here: https://www.youtube.com/watch?v=Wwiu0NE3mDE

parsing.py and dictionaries.py go together, and will convert a genbank full file into a useful Python dictionary. Post available here: http://www.omnesres.com/tools/nucleotide/ and video available here: https://www.youtube.com/watch?v=3kV1movMitQ