AI Scientist

1. [2025 arxiv] Towards an AI co-scientist [paper]
2. [2025 News] Self-driving laboratories, advanced immunotherapies and five more technologies to watch in 2025 [paper]

Awesome agents paper in the single-cell field

1. [2025 arxiv] BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments [paper]
2. [2025 biorxiv] CompBioAgent: An LLM-powered agent for single-cell RNA-seq data exploration [paper]
3. [2025 biorxiv] Spatial transcriptomics AI agent charts hPSC-pancreas maturation in vivo [paper]
4. [2025 biorxiv] SpatialAgent: An autonomous AI agent for spatial biology [paper]
5. [2025 biorxiv] scAgent: Universal Single-Cell Annotation via a LLM Agent [paper]
6. [2025 biorxiv] A Multi-Modal AI Copilot for Single-Cell Analysis with Instruction Following [paper]
7. [2024 Nature Methods] Omega — harnessing the power of large language models for bioimage analysis [paper]
8. [2024 Nature Methods] BioImage.IO Chatbot: a community-driven AI assistant for integrative computational bioimaging [paper]
9. [2024 biorxiv] An AI Agent for Fully Automated Multi-omic Analyses [paper]
10. [2024 biorxiv] CellAgent: An LLM-driven Multi-Agent Framework for Automated Single-cell Data Analysis [paper]

Awesome agents paper in other fields

1. [2025 arxiv] TxAgent: An AI agent for therapeutic reasoning across a universe of tools [paper]
2. [2025 arxiv] PharmAgents: Building a Virtual Pharma with Large Language Model Agents [paper]
3. [2024 Nature] A multimodal generative AI copilot for human pathology [paper]
4. [2024 arxiv] A Review of Large Language Models and Autonomous Agents in Chemistry [paper]
5. [2024 arxiv] The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery [paper]
6. [2024 biorxiv] MMedAgent: Learning to Use Medical Tools with Multi-modal Agent [paper]
7. [2024 biorxiv] CRISPR-GPT: An LLM Agent for Automated Design of Gene-Editing Experiments [paper]
8. [2024 biorxiv] BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow [paper]
9. [2024 biorxiv] Agent Hospital: A Simulacrum of Hospital with Evolvable Medical Agents [paper]
10. [2024 biorxiv] MedAgents: Large Language Models as Collaborators for Zero-shot Medical Reasoning [paper]
11. [2024 biorxiv] BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments [paper]
12. [2024 biorxiv] Empowering Biomedical Discovery with AI Agents [paper]