abdominal phantom up to date#70

Merged

oliverchampion merged 277 commits intoabdominal_phantomfrom

Jul 24, 2024

This pull request is big! We're only showing the most recent 250 commits

Commits on Aug 31, 2023

Moved the simple test run to separate file
IvanARashid
committed
Simple test run of standardized algorithms
IvanARashid
committed
Standardized version of ivim_fit_method_biexp by IAR_LundUniversity
IvanARashid
committed

Commits on Sep 1, 2023

Commits on Sep 8, 2023

added data
oliverchampion
committed

Commits on Sep 11, 2023

Commits on Sep 13, 2023

Parametrized the algorithm names in the testing. Made the search for algorithm files a little more robust.
IvanARashid
committed

Commits on Sep 15, 2023

Commits on Sep 18, 2023

Merge branch 'main' into testing/wrapper
IvanARashid
committed
Final touches before PR
IvanARashid
committed
Changed file name
IvanARashid
committed
Removed pycache
IvanARashid
committed

Commits on Sep 19, 2023

Added some np.asarray() to some variable definitions
IvanARashid
committed
Changed function name
IvanARashid
committed
Commented out unused check methods
IvanARashid
committed

Commits on Sep 21, 2023

Commits on Sep 22, 2023

Update code_contributions_record.csv
petravanhoudt
authored

Commits on Sep 25, 2023

Added check to see if root dir is in pytohnpath, if not, method is not executed.
IvanARashid
committed

Commits on Sep 29, 2023

Moved the ETP algorithm due to errors in testing
IvanARashid
committed
Fixed error when importing, also removed an import
IvanARashid
committed
Fixed import error
IvanARashid
committed
Fixed calls to removed imports
IvanARashid
committed
Update code_contributions_record.csv
paulienvoorter
authored
Patched up error with arrays of Nones
IvanARashid
committed
Squashed commit of the following:
IvanARashid
committed

Commits on Oct 3, 2023

added code description PV_MUMC
paulienvoorter
authored

Commits on Oct 9, 2023

Adapted my submissions to OsipiBase
IvanARashid
committed
Fixed bug in TopoPro
IvanARashid
committed
Added my submissions
IvanARashid
committed
Update PV_MUMC_biexp.py
paulienvoorter
authored

Commits on Oct 10, 2023

Merge pull request #12 from OSIPI/testing/wrapper
etpeterson
authored

Commits on Oct 12, 2023

Added bi-exp and segmented fit to wrapper
oliverchampion
committed

Commits on Oct 17, 2023

More advanced testing parameters
etpeterson
committed

Commits on Oct 18, 2023

added GU contributions to the record
oscarjalnefjord
committed

Commits on Oct 19, 2023

Commits on Oct 23, 2023

Commits on Oct 28, 2023

Commits on Oct 29, 2023

Also plot curves in the analysis
etpeterson
committed

Commits on Oct 31, 2023

Updated analysis script
etpeterson
committed

Commits on Nov 2, 2023

Commits on Nov 3, 2023

Commits on Nov 4, 2023

Commits on Nov 5, 2023

Commits on Nov 7, 2023

Merge pull request #26 from OSIPI/analysis/improvements
oscarjalnefjord
authored

Commits on Dec 12, 2023

Commits on Dec 13, 2023

Commits on Dec 23, 2023

Further ease restrictions on IAR_LU_modified_mix
etpeterson
committed

Commits on Jan 5, 2024

Add analysis badge to main page
etpeterson
committed

Commits on Feb 2, 2024

Merge pull request #30 from OSIPI/analysis/parallel_processing
IvanARashid
authored

Commits on Feb 6, 2024

Prevent tests from trying to run the example
etpeterson
committed

Commits on Feb 21, 2024

clean HEAD
DKuppens
authored

Commits on Feb 22, 2024

Commits on Feb 26, 2024

added super ivim dc
ang.a
committed

Commits on Feb 27, 2024

Commits on Feb 28, 2024

Commits on Feb 29, 2024

Commits on Mar 1, 2024

Commits on Mar 5, 2024

Cache python environment.
AhmedBasem20
committed

Commits on Mar 7, 2024

Commits on Mar 8, 2024

report on repo
abhicodes369
committed

Commits on Mar 9, 2024

Generate a variety of testing data and came up
Unique-Usman
committed

Commits on Mar 12, 2024

Update the README file to include the information the sim_vim_sig.py and also how to run the script.
Unique-Usman
committed

Commits on Mar 13, 2024

Commits on Mar 15, 2024

Commits on Mar 19, 2024

use the official download method.
AhmedBasem20
committed

Commits on Mar 20, 2024

Prevent deploying on every push
AhmedBasem20
committed

Commits on Mar 21, 2024

Commits on Mar 24, 2024

A python script to wrap image read and write for Nifti Images.
Unique-Usman
committed

Commits on Mar 25, 2024

Followed up with the required change
Unique-Usman
committed

Commits on Mar 26, 2024

Commits on Mar 29, 2024

Merge pull request #59 from AhmedBasem20/api-docs
etpeterson
authored

Commits on Apr 7, 2024

separate the deploy job from the build job
AhmedBasem20
committed

Commits on Apr 8, 2024

Merge pull request #61 from AhmedBasem20/refactor-pipelines
etpeterson
authored

Commits on Apr 10, 2024

Added read_bval_file and read_bvec_file to read the bvec and the bval data
Unique-Usman
committed

Commits on Apr 11, 2024

Refactor column names in repostatus.py and combined_report.html
abhicodes369
committed

Commits on Apr 17, 2024

Merge pull request #56 from abhicodes369/created_repostatus/statistics
etpeterson
authored

Commits on Apr 23, 2024

Fixed the error in the script wrapper
Unique-Usman
committed

Commits on Apr 24, 2024

Use tqdm python3 library to show the progress of the wrapper when running
Unique-Usman
committed

Commits on Apr 26, 2024

Update README.md
etpeterson
authored

Commits on Apr 29, 2024

Changed the total argument from hard coded value to dynamic value which is gotten from the image itself
Unique-Usman
committed

Commits on Apr 30, 2024

Merge pull request #60 from Unique-Usman/wrapper
etpeterson
authored

Commits on Jun 1, 2024

created the dockerise version of the TF2.4_IVIM-MRI_CodeCollection
Unique-Usman
committed

Commits on Jun 5, 2024

Make the python to use version 3.11 docker version, created a dedicated directory for the Dockerfile and also added a README file to explain the build and run process
Unique-Usman
committed

Commits on Jun 7, 2024

Merge pull request #66 from Unique-Usman/osipi_docker
etpeterson
authored

Commits on Jun 11, 2024

Updated the README.md file and also fixed issue with the nifti_wrapper.py by making the algorithm_args optional to prevent it from overiding algorithm
Unique-Usman
committed

Commits on Jun 12, 2024

Merge pull request #69 from Unique-Usman/osipi_docker
etpeterson
authored

Commits on Jul 23, 2024

Update sim_ivim_sig.py
oliverchampion
authored