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samtools sort: failed to create "lgs.part001.sort.bam": Stale file handle

Status: Open.

#144 In Nextomics/NextPolish;

· Peterhhb opened on Aug 7, 2025

polish for scaffod.fa(contain Ns)

Status: Open.

#139 In Nextomics/NextPolish;

· DayTimeMouse opened on Oct 2, 2024

NextPolish for metagenome?

Status: Open.

#138 In Nextomics/NextPolish;

· 123chenshixin opened on Sep 14, 2024

After I run nextPolish run.cfg, the NextPolish vanished and generate a copy

Status: Open.

#135 In Nextomics/NextPolish;

· SoSongzhi opened on Aug 28, 2024

The telemore sequences were removed after Nextpolish

Status: Open.

#134 In Nextomics/NextPolish;

· YouxinZhao opened on Jul 28, 2024

An error message was encountered while running 00.lgs_polish/04.polish.ref.sh.work/polish_genome01

Status: Open.

#132 In Nextomics/NextPolish;

· jiuyaojiaonini opened on Apr 23, 2024

The process of polishing causes a significant decrease in genome size.

Status: Open.

#130 In Nextomics/NextPolish;

· xujialupaoli opened on Apr 11, 2024

problem with NextPolish-CentOS6.9.tgz

Status: Open.

#129 In Nextomics/NextPolish;

· zhengyanstu opened on Mar 21, 2024

polish_genome failed

Status: Open.

#128 In Nextomics/NextPolish;

· liuyca1 opened on Mar 15, 2024

[main_samview] fail to read the header from "-"

Status: Open.

#126 In Nextomics/NextPolish;

· kishor2019 opened on Dec 26, 2023

run fails with long read only in conda env

Status: Open.

#124 In Nextomics/NextPolish;

· splaisan opened on Nov 8, 2023

make[2]: *** [Makefile:30: bwa] Error 1 错误

Status: Open.

#121 In Nextomics/NextPolish;

· smoothyly opened on Oct 22, 2023