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Annotations: completes exporting and extraction of annotations that we use in NeuroML #354

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Merged
merged 22 commits into from
May 22, 2024
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d71d873
feat(annotations): use bags for entries with multiple values
sanjayankur31 May 2, 2024
7f7cdfb
feat(annotations): update creation code
sanjayankur31 May 2, 2024
6cb6933
feat(annotations): refactor code
sanjayankur31 May 2, 2024
d6d0c98
wip: extracting annotations
sanjayankur31 May 2, 2024
79071f5
chore(xml-utils): document functions
sanjayankur31 May 3, 2024
e07169b
feat(annotation): tweak valid URIRef prefixes
sanjayankur31 May 3, 2024
3297d2c
fix(annotations): correct creation keywords
sanjayankur31 May 3, 2024
e453d73
test(annotations): split creation tests
sanjayankur31 May 3, 2024
02ba6a1
feat(annotations): improve testing of both miriam and biosimulation s…
sanjayankur31 May 3, 2024
77d443f
feat(annotations): update extraction code
sanjayankur31 May 3, 2024
3426c6b
feat(annotations): remove temporary test file
sanjayankur31 May 3, 2024
cc6f220
chore(pre-commit): include ruff linter for isort
sanjayankur31 May 3, 2024
07a1f47
chore(pre-commit): fix linter args
sanjayankur31 May 3, 2024
0debe5b
feat(annotation): ignore empty arguments while creating
sanjayankur31 May 3, 2024
736f4f8
feat(annotations): handle license specially
sanjayankur31 May 3, 2024
8cb599c
test(annotation): improve checks
sanjayankur31 May 3, 2024
909a384
feat(annotations): add orcid identifier
sanjayankur31 May 3, 2024
d0a544a
test(annotations): test orcid
sanjayankur31 May 3, 2024
75d7f8c
chore(annotations): update docstrings
sanjayankur31 May 8, 2024
bb5dbfb
chore(annotations): fix doc strings
sanjayankur31 May 8, 2024
7920e2b
Merge branch 'development' into feat/more-annotations
sanjayankur31 May 10, 2024
2cbd27b
Merge branch 'development' into feat/more-annotations
sanjayankur31 May 22, 2024
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2 changes: 2 additions & 0 deletions .pre-commit-config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,4 +10,6 @@ repos:
- repo: https://github.com/astral-sh/ruff-pre-commit
rev: v0.4.1
hooks:
- id: ruff
args: [ "--select", "I", "--fix" ]
- id: ruff-format
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