Release v1.1

Major Nutil release. This version contains Nutil Quantifier only (Transform has been removed, it will not be supported in future versions).

Supported atlases:

• Allen Mouse Brain Atlas Common Coordinate Framework version 3 (CCFv3) (delineations from 2017 or 2015).
• Waxholm Atlas of the Spraque Dawley Rat (WHS) (version 2, 3 and 4).
• Kim Unified Adult Mouse Brain Atlas (version 1, 2019).
• Developmental Mouse Brain Atlas for ages P4-P56 (DeMBA) with Allen CCFv3 delineations from 2017.
• Developmental Mouse Brain Atlas for ages P4-P56 (DeMBA) with Kim Lab developmental delineations (KimLabDev CCFv001).

Change log:

• Atlas hierarchy and custom region files are included for all the listed atlases.
• The "object_splitting" feature in Nutil has been renamed to "Counts or Area Fraction". WARNING: There is a known issue here. Nutil runs "Count" calculations even when "Area fraction" is selected (see known issues below for more information).
• Improved error messaging.

Known issues:

There is a known issue with selection of "counts" or "area fraction" in Nutil v1.1.0. This means that even when "area fraction" is selected, it will perform the calculations as if "counts" were selected. In other words, it is not possible to achieve correct "area fraction" calculations for objects that overlap several atlas regions for Nutil v1.1.0. If you need this functionality, please use Nutil v0.8.0. For objects that do not overlap atlas regions, the "counts" setting will calculate correct "area fraction".   

Release v0.8.0

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