NanoString Technologies, Inc.
Pinned Loading
Repositories
- GeomxTools Public
Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.
Nanostring-Biostats/GeomxTools’s past year of commit activity - CosMx-Analysis-Scratch-Space Public
This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
Nanostring-Biostats/CosMx-Analysis-Scratch-Space’s past year of commit activity - SpatialOmicsOverlay Public
Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
Nanostring-Biostats/SpatialOmicsOverlay’s past year of commit activity - GeoMxWorkflows Public
Workflows for analyzing data with the GeomxTools package and subsequent GeoMx related packages
Nanostring-Biostats/GeoMxWorkflows’s past year of commit activity - NanoStringNCTools Public
Tools for NanoString Technologies nCounter Technology for reading RCC files into an ExpressionSet derived object, QC and normalization.
Nanostring-Biostats/NanoStringNCTools’s past year of commit activity - CellProfileLibrary Public
Nanostring-Biostats/CellProfileLibrary’s past year of commit activity - FastReseg Public
FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.
Nanostring-Biostats/FastReseg’s past year of commit activity - GeoDiff Public
GeoDiff, an R package for count generating models for analyzing Geomx RNA data. Note that this version of the package is still under development, undergoing submission process to Bioconductor 3.14 release and still needs to complete NanoString internal verification process.
Nanostring-Biostats/GeoDiff’s past year of commit activity - SpatialDecon Public
The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This algorithm also works in bulk expression profiling data.)
Nanostring-Biostats/SpatialDecon’s past year of commit activity
People
This organization has no public members. You must be a member to see who’s a part of this organization.
Most used topics
Loading…