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1. Beeline Beeline Public

   BEELINE: evaluation of algorithms for gene regulatory network inference

   Python 192 57

2. SARS-CoV-2-network-analysis SARS-CoV-2-network-analysis Public

   Software framework for analysis of SARS-CoV-2 molecular networks

   Jupyter Notebook 6 3

3. GraphSpace GraphSpace Public

   The interactive graph sharing website.

   Python 30 40

4. PathLinker PathLinker Public

   Connect the dots in networks.

   Python 19 10

5. BoolODE BoolODE Public

   Git Repo for simulating Boolean Models

   Python 35 19

6. PathLinker-Cytoscape PathLinker-Cytoscape Public

   Cytoscape plugin for PathLinker

   Java 3 5