This GitHub organization is the canonical public location for our software.
Download an Apptainer/Singularity container containing our software toolchain from cloud.sylabs.io or build it from source from our mice-apptainer repository.
The Dorr 2008 mouse brain atlas is available for download (or clone via datalad-osf) from osf.io.
Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and writing of MINC volumes, running voxel-wise linear models, correlations, etc.; correcting for multiple comparisons using the False Discovery Rate, and more. With contributions from Jason Lerch, Chris Hammill, J…
Laplace's equation for measuring thickness (or other uses of streamlines) between two boundaries
A python interface to the MINC 2 library, allowing use of numpy arrays to access MINC data, and other such similar goodies, developed by Jason Lerch
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