Space Microbial Biomanufacturing is a Go: Survivability, Usability, and Reliability for Next Generation Life Support

System Requirements

This codebase uses Python 3.11.13. The required packages and their corresponding versions for this repo can be found in requirements.txt.

Installation

The user is assumed to have Anaconda and an IDE that can open .ipynb files installed.

To set up the environment, open Anaconda Prompt and run the following command (where <env_name> is the name of the environment): conda create -n <env_name> python=3.11.13

To install the required packages, first activate the environment:

conda activate <env_name>

Then, run the following commands:

conda install -c anaconda git

pip install -r requirements.txt

Installation on a "normal" computer should require approximately 1 hour.

Demo

There are a total of four .ipynb files, each corresponding to a unique combination of growth/titer and before/after transfer learning.

To run the data, go to the corresponding main file (i.e. main_growth.ipynb) and click "Run all".

The expected output is a plot that shows the predicted 95% confidence interval of the model and the corresponding flight data.

On a "normal" computer, this will take approximately 10 minutes to run.