Analysis of transcriptome data from M. oryzae 4091 and Δpth11 when challenged with B. velezensis S4 and L. enzymogenes C3
For experimental description, see: Riddick B. 2016. Toward Identification of Genetic Components of Fungal Immunity Using the Rice Blast Fungus, Magnaporthe oryzae as a Model. University of Delaware.
Workflow was adapted from scripts provided by Jessica Keffer and scripts provided by a course taught by Dr. Shawn Polson.
All scripts were run in Biomix on an Ubuntu operating system terminal using Linux language unless specified. Version names are listed in the workflow document as applicable.
For the order in which scripts were run, see Workflow.