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1. grc_analysis grc_analysis Public

   The GRC Project is a Malaria Drug Resistance Surveillance to assess molecular markers of chloroquine resistance of Plasmodium falciparum samples from multiple African countries.

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2. VCF_Analysis VCF_Analysis Public

   This project help user to do basic exploration of vcf file to access its quality before proceeding with further analysis. The script contain codes written in **Bash, R and also using VCFTools & BCF…

   Shell

3. Malaria_Vector_Genomics_Analysis Malaria_Vector_Genomics_Analysis Public

   This a pipeline teaching the basics of bioinformatics and variant calling tailored for malaria vector genomics surveillance implemented in a cloud-based environment using Google Colab.

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4. Malaria_WGS_Nextflow_Pipeline Malaria_WGS_Nextflow_Pipeline Public

   Variant calling pipeline for P. falciparum and P. vivax whole genome sequencing (WGS) data. Automated quality control, adapter trimming, alignment, variant calling, and VCF filtering to produce hig…

   Nextflow