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This is the reproduction and further study for simulation part of paper:

Song, Yang, et al. "Size Control of On-Surface Self-Assembled Nanochains Using Soft Building Blocks." The Journal of Physical Chemistry Letters 14.50 (2023): 11324-11332.

modeling of organic molecular blocks:

image-20250501144658613

some result with force control:

image-20250501144912471

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reproduction of simulation part of paper:

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