My personal note for ChIP-seq analysis
- ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia (2012)
- Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data(2013)
- Effective Genome Size parameter required by MACS3 as
--macs_gsize. Therefore, for read length 50 and ref genome GRCh38,--macs_gsize = 2701495711. Please note that the pre-defined read lenght will be used for iGenomes reference.