Girder 5 Upgrade

[BryonLewis]

Following the Girder 5 Upgrade

Using Migration Guide

ON HOLD: This is on hold until I get some way to propery set the girder plugins to utilize the /girder installation location.

TODO:

• Tag new version of builds to girder-5
• Update Environment Variables
  • WORKER_API_URL -> GIRDER_SETTING_WORKER_API_URL
  • CELERY_BROKER_URL -> GIRDER_WORKER_BROKER
  • Add GIRDER_WORKER_BACKEND
• Remove RUN girder build and corresponding logic from the docker build process
• replace all import logger from girder with import logging and configuration a logger
• Update pyproject.toml dependencies to use girder-5 compatible versions of girder plugins
• Specifically update the large-image pluging to use the girder 5 version
• add the girder-worker-plugin and replace calls that were in girder_worker.girder_plugin to use girder_worker_plugin
• Modify the __init__.py to configure the route for the DIVE Vue application interface.
• Finalize the Girder Core build so it will build all plugins with the proper references to files. Currently plugins aren't properly referencing the /girder subpath
• Update client code to use websockets vs the eventstream that was previously being used for notifications (may require overriding some GWC stuff
• Testing conversion tasks
• Testing Pipeline tasks
• Testing training tasks.
• Test import of S3/MinIO data and ensure it works