Annotating unknown microbial species in a global microbiome cohort unveils novel functional diversity and local environment association
Urban MAGs were generated using 4,728 metagenome samples obtained from 60 cities worldwide, Metagenomes were assembled with metaSPAdes and MAGs were constructed by binning contigs per-sample using MetaBAT2.
High quality MAGs (N=1,448)
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- High quality MAGs meet the following criterea:
- > 90% estimated completeness
- < 5% estimated contamination
- < 0.5% estimated strain heterogeneity
- > 50 QS=completeness - 5×contamination
Medium quality MAGs (N=4,532)
- Medium quality MAGs meet the following criterea:
- >50% estimated completeness
- < 5% estimated contamination
- > 50 QS=completeness - 5×contamination
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Metadata and the sequencing reads can be founded in the publicly available repository on Pangea (https://pangea.gimmebio.com/)