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JasonJiangs/README.md

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💻 Interests

  • Deep Learning Methods for Molecular Interactions
  • Large Language Model for Life Sciences
  • Computational Genomics and Systems Biology

I am a visiting researcher at the Westlake University, Hangzhou, China. Previously I worked at Stanford, U Florida, U Virginia, and Alibaba Cloud. I am working on deep learning and GenAI for biology and drug discovery, and explore how to discover and interpret new biology using computational models.

Pinned Loading

  1. zanglab/SICER2 zanglab/SICER2 Public

    Python 22 16

  2. aristoteleo/tabula aristoteleo/tabula Public

    federated learning with tabular learning

    Jupyter Notebook 20 2

  3. SophieSarceau/SequenceDisplay-ML SophieSarceau/SequenceDisplay-ML Public

    Official codebase for Sequence Display: a platform that integrates large-scale sequence–activity datasets with protein language models to map activity landscapes and identify high-performance prote…

    Python 3

  4. cellethology/GLM-Nullsette-Benchmark cellethology/GLM-Nullsette-Benchmark Public

    This is a repository of scripts for reproducing benchmarking genomic language model on Nullsettes.

    Python 2

  5. linqicheng-xiao/gmx_mmpbsa_py linqicheng-xiao/gmx_mmpbsa_py Public

    A Python script employs the MMPBSA method to integrate GROMACS and APBS software, facilitating the calculation of binding free energy between proteins and small molecules.

    Python 2

  6. HNOX_Pred HNOX_Pred Public

    HNOXPred: a web tool for the prediction of gas sensing H-NOX proteins from amino acid sequence

    JavaScript