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Update Dockstore.cwl
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Dockstore.cwl

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@@ -9,7 +9,7 @@ dct:creator:
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foaf:mbox: mailto:keiranmraine@gmail.com
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requirements:
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- class: DockerRequirement
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dockerPull: quay.io/pancancer/pcawg-sanger-cgp-workflow:feature_cwl1
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dockerPull: quay.io/pancancer/pcawg-sanger-cgp-workflow:2.0.0-cwl1
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cwlVersion: v1.0
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@@ -73,10 +73,5 @@ baseCommand: [python, /home/seqware/CGP-Somatic-Docker/scripts/run_seqware_workf
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doc: "The Sanger's Cancer Genome Project core somatic calling workflow from \nthe\
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\ ICGC PanCancer Analysis of Whole Genomes (PCAWG) project.\nFor more information\
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\ see the PCAWG project [page](https://dcc.icgc.org/pcawg) and our GitHub\n[page](https://github.com/ICGC-TCGA-PanCancer)\
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\ for our code including the source for\n[this workflow](https://github.com/ICGC-TCGA-PanCancer/CGP-Somatic-Docker).\n\
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```\nUsage:\n# fetch CWL\n$> dockstore cwl --entry quay.io/pancancer/pcawg-sanger-cgp-workflow:2.0.0\
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\ > Dockstore.cwl\n# make a runtime JSON template and edit it\n$> dockstore convert\
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\ cwl2json --cwl Dockstore.cwl > Dockstore.json\n# run it locally with the Dockstore\
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\ CLI\n$> dockstore launch --entry quay.io/pancancer/pcawg-sanger-cgp-workflow:2.0.0\
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\ \\\n --json test1.json\n```\n"
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\ for our code including the source for\n[this workflow](https://github.com/ICGC-TCGA-PanCancer/CGP-Somatic-Docker)."
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