ICGC-TCGA-PanCancer
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TumorType-WGS
TumorType-WGS PublicClassifying tumor types based on Whole Genome Sequencing (WGS) data
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pcawg_delly_workflow
pcawg_delly_workflow PublicA mirror of https://bitbucket.org/weischen/pcawg-delly-workflow
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CGP-Somatic-Docker
CGP-Somatic-Docker PublicDockerised and simplified version of SeqWare-CGP-SomaticCore
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Seqware-BWA-Workflow
Seqware-BWA-Workflow PublicThis is the BWA workflow used in the PanCancer project used to allign all the BAM files.
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Repositories
- PCAP-core Public
Legacy, see cancerit/PCAP-core: NGS reference implementations and helper code for the IGCG/TCGA Pan-Cancer Analysis Project
ICGC-TCGA-PanCancer/PCAP-core’s past year of commit activity - Seqware-BWA-Workflow Public
This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
ICGC-TCGA-PanCancer/Seqware-BWA-Workflow’s past year of commit activity - pcawg3-transcriptome-integration Public
Code for the integration of all transcriptomic abberations of the PCAWG Transcriptome working group (PCAWG3)
ICGC-TCGA-PanCancer/pcawg3-transcriptome-integration’s past year of commit activity - pcawg-metadata Public Forked from icgc-argo-workflows/metadata-for-benchmarking-datasets
This repository contains metadata information for PCAWG WGS/RNA-Seq/Validation datasets
ICGC-TCGA-PanCancer/pcawg-metadata’s past year of commit activity
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