This repository provides resources for you to reproduce the results of our original paper, and show-cases the functionality of EXPERT.
Enabling technology for microbial source tracking based on transfer learning: From ontology-aware general knowledge to context-aware expert systems
Hui Chong, Qingyang Yu, Yuguo Zha, Guangzhou Xiong, Nan Wang, Chuqing Sun, Sicheng Wu, Weihua Chen, Kang Ning
bioRxiv 2021.01.29.428751; doi: https://doi.org/10.1101/2021.01.29.428751
| Description | Source contribution estimated & Accuracy assessed | Notebook |
|---|---|---|
| Generalizing general knowledge into context-dependent application: systematic assessment. | Generalizing-general-knowledge, Human-assessment | general-assessment, Human-assessment |
| EXPERT enables lifelong adaptation for emerging microbiome data. | Emerging-assessment | Emerging |
| Source tracking the succession of infant gut microbiome. | Infant-succession | Infant-succession |
| EXPERT for systematic disease diagnosis and disease progression monitoring. | Disease diagnosis, progression monitoring | Disease diagnosis, progression monitoring |
| EXPERT implicates time-related compositional shifts in travel longitudinal study. | Travel to Trinidad and Tobago, Seasonal cycling | Travel to Trinidad and Tobago, Seasonal cycling |