Popular repositories Loading

1. DepMap_Mining DepMap_Mining Public

   Code for identifying cohort-specific oncogenic dependencies and cohort-insensitive pan-essentials using DepMap + a cohort of CRISPR screens analyzed with MAGeCk.

   Jupyter Notebook 1 2

2. 2022_cFLIP_Stats_Figures 2022_cFLIP_Stats_Figures Public

   Code and workbooks for figures and statistical testing from 2022 manuscript in preparation.

   Jupyter Notebook

3. Gottwein_CRISPR_Variant_Calling Gottwein_CRISPR_Variant_Calling Public

   Script for characterizing and quantiftying variants based on data returned from the Massachusetts General Hospital CCIB DNA Core.

   Python

4. CRISPR_Screen_Processing CRISPR_Screen_Processing Public

   Forked from nkuehnle/CRISPR_Screen_Processing

   A basic working example that you can follow through to semi-automate the analysis of pooled CRISPR screen data in a uniform way using MAGeCK and/or DrugZ for enrichment/depletion analysis. See Read…

   Shell