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0.3.0
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@kathyxchen kathyxchen released this 15 Mar 18:21
· 252 commits to master since this release
0.3.0
0616f42

Selene version 0.3.0. Tested previously as a pre-release.

The updates to 0.3.0:

  • Saving outputs for variant effect prediction to HDF5 or TSV files (used to only be TSV).
  • Allowing users to set a write memory limit for how many predictions to store (for prediction, in silico mutagenesis, variant effect prediction) before writing them to a file.
  • Major refactor for the predict module
  • Updating variant effect prediction sequence creation so that it matches how the sequences are created in ExPecto (that is, how the variant is centered in an N bp sequence).

Bug fix:

  • Loading model checkpoint in the TrainModel class.
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