Rebuild R 4.2.2 and 4.3.2 to include patch for CVE #1062

bedroge · 2025-05-01T12:09:44Z

This ensures that all stacks/targets have the same version (some may already have the patch, e.g. Sapphire Rapids and Grace).

Edit:

$ grep CVE /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/*/*/software/R/4.2.2-foss-2022b/easybuild/R-4.2.2-foss-2022b.eb 
/cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/software/R/4.2.2-foss-2022b/easybuild/R-4.2.2-foss-2022b.eb:patches = ['R-4.x_fix-CVE-2024-27322.patch']
/cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/software/R/4.2.2-foss-2022b/easybuild/R-4.2.2-foss-2022b.eb:    {'R-4.x_fix-CVE-2024-27322.patch': 'd8560e15c3c5716f99e852541901014d406f2a73136b0b74f11ba529f7a7b00d'},
/cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/sapphirerapids/software/R/4.2.2-foss-2022b/easybuild/R-4.2.2-foss-2022b.eb:patches = ['R-4.x_fix-CVE-2024-27322.patch']
/cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/sapphirerapids/software/R/4.2.2-foss-2022b/easybuild/R-4.2.2-foss-2022b.eb:    {'R-4.x_fix-CVE-2024-27322.patch': 'd8560e15c3c5716f99e852541901014d406f2a73136b0b74f11ba529f7a7b00d'},

$ grep CVE /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/generic/software/R/4.2.2-foss-2022b/easybuild/R-4.2.2-foss-2022b.eb 

$ grep CVE /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/*/software/R/4.2.2-foss-2022b/easybuild/R-4.2.2-foss-2022b.eb 

$ grep CVE /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/*/*/software/R/4.2.2-foss-2022b/easybuild/R-4.2.2-foss-2022b.eb 
patches = ['R-4.x_fix-CVE-2024-27322.patch']
    {'R-4.x_fix-CVE-2024-27322.patch': 'd8560e15c3c5716f99e852541901014d406f2a73136b0b74f11ba529f7a7b00d'},

So, also zen4 already has the fix.

Edit 2: I'm doing the same kind of rebuild for version 4.3.2, which has the same issue and also already includes the fix for the aforementioned targets.

For a64fx, version 4.3.2 is already available and includes the fix. Version 4.2.2 has not been built yet, but assuming @trz42 will do the build in the same way as he has done for grace, it will automatically get the fix.

eessi-bot · 2025-05-01T12:09:47Z

Instance eessi-bot-mc-aws is configured to build for:

architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphirerapids, x86_64/intel/skylake_avx512, x86_64/intel/cascadelake, x86_64/intel/icelake, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

eessi-bot-deucalion · 2025-05-01T12:09:48Z

Instance eessi-bot-deucalion is configured to build for:

architectures: aarch64/a64fx
repositories: eessi.io-2023.06-software

eessi-bot · 2025-05-01T12:09:48Z

Instance eessi-bot-mc-azure is configured to build for:

architectures: x86_64/amd/zen4
repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

gpu-bot-ugent · 2025-05-01T12:09:49Z

Instance eessi-bot-vsc-ugent is configured to build for:

architectures: x86_64/amd/zen3
repositories: eessi-hpc.org-2023.06-software, eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

eessi-bot-surf · 2025-05-01T12:09:49Z

Instance eessi-bot-surf is configured to build for:

architectures: x86_64/amd/zen4, x86_64/amd/zen2
repositories: eessi-hpc.org-2023.06-software, eessi.io-2023.06-software, eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat

bedroge · 2025-05-01T12:29:11Z

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/neoverse_v1

eessi-bot · 2025-05-01T12:29:15Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen2 resulted in:
- submitted job 60154, for details & status see Rebuild R 4.2.2 and 4.3.2 to include patch for CVE #1062 (comment)
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen3 resulted in:
- submitted job 60155, for details & status see Rebuild R 4.2.2 and 4.3.2 to include patch for CVE #1062 (comment)
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 60156, for details & status see Rebuild R 4.2.2 and 4.3.2 to include patch for CVE #1062 (comment)
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/haswell resulted in:
- submitted job 60157, for details & status see Rebuild R 4.2.2 and 4.3.2 to include patch for CVE #1062 (comment)
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/generic resulted in:
- submitted job 60158, for details & status see Rebuild R 4.2.2 and 4.3.2 to include patch for CVE #1062 (comment)
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/generic resulted in:
- submitted job 60159, for details & status see Rebuild R 4.2.2 and 4.3.2 to include patch for CVE #1062 (comment)
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_n1 resulted in:
- submitted job 60160, for details & status see Rebuild R 4.2.2 and 4.3.2 to include patch for CVE #1062 (comment)
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_v1 resulted in:
- submitted job 60161, for details & status see Rebuild R 4.2.2 and 4.3.2 to include patch for CVE #1062 (comment)

eessi-bot · 2025-05-01T12:29:15Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen2 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen3 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/skylake_avx512 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/haswell resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_n1 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_v1 resulted in:
- no jobs were submitted

gpu-bot-ugent · 2025-05-01T12:29:15Z

Updates by the bot instance eessi-bot-vsc-ugent (click for details)

received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen2 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen3 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/skylake_avx512 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/haswell resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_n1 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_v1 resulted in:
- no jobs were submitted

eessi-bot-deucalion · 2025-05-01T12:29:15Z

Updates by the bot instance eessi-bot-deucalion (click for details)

received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/generic from bedroge
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received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/generic from bedroge
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received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen2 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen3 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/skylake_avx512 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/haswell resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_n1 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_v1 resulted in:
- no jobs were submitted

eessi-bot-surf · 2025-05-01T12:29:15Z

Updates by the bot instance eessi-bot-surf (click for details)

received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/skylake_avx512
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- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen2 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/amd/zen3 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/skylake_avx512 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/intel/haswell resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_n1 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software instance:eessi-bot-mc-aws architecture:aarch64/neoverse_v1 resulted in:
- no jobs were submitted

eessi-bot · 2025-05-01T12:29:20Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.05/pr_1062/60154

date	job status	comment
May 01 12:29:19 UTC 2025	submitted	job id `60154` awaits release by job manager
May 01 12:30:23 UTC 2025	released	job awaits launch by Slurm scheduler
May 01 12:37:08 UTC 2025	running	job `60154` is running
May 01 23:17:06 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-60154.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-17461402730.tar.gz` size: 1732 MiB (1816639814 bytes) entries: 81786 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `R/4.2.2-foss-2022b.lua` `R/4.3.2-gfbf-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `R/4.2.2-foss-2022b` `R/4.3.2-gfbf-2023a` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
May 01 23:17:06 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:x86_64_amd_zen2+default P: perf: 437.434 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86_64_amd_zen2+default P: perf: 441.138 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86_64_amd_zen2+default P: latency: 2.15 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86_64_amd_zen2+default P: latency: 2.01 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86_64_amd_zen2+default P: latency: 3.99 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86_64_amd_zen2+default P: latency: 4.21 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86_64_amd_zen2+default P: latency: 0.58 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86_64_amd_zen2+default P: latency: 0.56 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86_64_amd_zen2+default P: bandwidth: 6776.87 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86_64_amd_zen2+default P: bandwidth: 6747.71 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-60154.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 05 06:53:10 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-17461402730.tar.gz` to S3 bucket succeeded

eessi-bot · 2025-05-01T12:29:25Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.05/pr_1062/60155

date	job status	comment
May 01 12:29:24 UTC 2025	submitted	job id `60155` awaits release by job manager
May 01 12:30:25 UTC 2025	released	job awaits launch by Slurm scheduler
May 01 12:37:10 UTC 2025	running	job `60155` is running
May 01 20:28:59 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-60155.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-17461303570.tar.gz` size: 1731 MiB (1816010025 bytes) entries: 81786 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `R/4.2.2-foss-2022b.lua` `R/4.3.2-gfbf-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `R/4.2.2-foss-2022b` `R/4.3.2-gfbf-2023a` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
May 01 20:28:59 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:x86_64_amd_zen3+default P: perf: 527.916 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86_64_amd_zen3+default P: perf: 538.616 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86_64_amd_zen3+default P: latency: 1.13 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86_64_amd_zen3+default P: latency: 1.06 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86_64_amd_zen3+default P: latency: 2.06 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86_64_amd_zen3+default P: latency: 2.12 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86_64_amd_zen3+default P: latency: 0.27 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86_64_amd_zen3+default P: latency: 0.23 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86_64_amd_zen3+default P: bandwidth: 13127.78 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86_64_amd_zen3+default P: bandwidth: 13341.76 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-60155.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 05 06:53:51 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-17461303570.tar.gz` to S3 bucket succeeded

eessi-bot · 2025-05-01T12:29:31Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.05/pr_1062/60156

date	job status	comment
May 01 12:29:30 UTC 2025	submitted	job id `60156` awaits release by job manager
May 01 12:30:31 UTC 2025	released	job awaits launch by Slurm scheduler
May 01 12:37:15 UTC 2025	running	job `60156` is running
May 01 20:59:17 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-60156.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-17461319630.tar.gz` size: 1732 MiB (1817180364 bytes) entries: 81786 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `R/4.2.2-foss-2022b.lua` `R/4.3.2-gfbf-2023a.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `R/4.2.2-foss-2022b` `R/4.3.2-gfbf-2023a` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
May 01 20:59:17 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:x86_64_intel_skylake_avx512+default P: perf: 436.275 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86_64_intel_skylake_avx512+default P: perf: 450.393 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86_64_intel_skylake_avx512+default P: latency: 1.79 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86_64_intel_skylake_avx512+default P: latency: 1.78 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86_64_intel_skylake_avx512+default P: latency: 3.36 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86_64_intel_skylake_avx512+default P: latency: 3.74 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86_64_intel_skylake_avx512+default P: latency: 0.44 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86_64_intel_skylake_avx512+default P: latency: 0.43 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86_64_intel_skylake_avx512+default P: bandwidth: 10668.84 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86_64_intel_skylake_avx512+default P: bandwidth: 10697.73 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-60156.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 05 06:54:29 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-17461319630.tar.gz` to S3 bucket succeeded

eessi-bot · 2025-05-01T12:29:36Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.05/pr_1062/60157

date	job status	comment
May 01 12:29:35 UTC 2025	submitted	job id `60157` awaits release by job manager
May 01 12:30:29 UTC 2025	released	job awaits launch by Slurm scheduler
May 01 12:38:23 UTC 2025	running	job `60157` is running
May 01 21:19:54 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-60157.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-17461332720.tar.gz` size: 1732 MiB (1816696337 bytes) entries: 81786 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `R/4.2.2-foss-2022b.lua` `R/4.3.2-gfbf-2023a.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `R/4.2.2-foss-2022b` `R/4.3.2-gfbf-2023a` other under 2023.06/software/linux/x86_64/intel/haswell no other files in tarball
May 01 21:19:54 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:x86_64_intel_haswell+default P: perf: 458.146 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86_64_intel_haswell+default P: perf: 451.889 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86_64_intel_haswell+default P: latency: 2.98 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86_64_intel_haswell+default P: latency: 2.83 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86_64_intel_haswell+default P: latency: 4.17 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86_64_intel_haswell+default P: latency: 23.31 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86_64_intel_haswell+default P: latency: 0.8 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86_64_intel_haswell+default P: latency: 0.77 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86_64_intel_haswell+default P: bandwidth: 10430.31 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86_64_intel_haswell+default P: bandwidth: 10411.38 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-60157.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 05 06:55:11 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-17461332720.tar.gz` to S3 bucket succeeded

eessi-bot · 2025-05-01T12:29:41Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.05/pr_1062/60158

date	job status	comment
May 01 12:29:40 UTC 2025	submitted	job id `60158` awaits release by job manager
May 01 12:30:27 UTC 2025	released	job awaits launch by Slurm scheduler
May 01 13:34:08 UTC 2025	running	job `60158` is running
May 01 22:09:37 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-60158.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-17461362260.tar.gz` size: 1729 MiB (1813542060 bytes) entries: 81786 modules under 2023.06/software/linux/x86_64/generic/modules/all `R/4.2.2-foss-2022b.lua` `R/4.3.2-gfbf-2023a.lua` software under 2023.06/software/linux/x86_64/generic/software `R/4.2.2-foss-2022b` `R/4.3.2-gfbf-2023a` other under 2023.06/software/linux/x86_64/generic no other files in tarball
May 01 22:09:37 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:x86_64_generic+default P: perf: 404.828 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86_64_generic+default P: perf: 394.998 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86_64_generic+default P: latency: 3.36 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86_64_generic+default P: latency: 3.12 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86_64_generic+default P: latency: 6.06 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86_64_generic+default P: latency: 5.85 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86_64_generic+default P: latency: 0.73 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86_64_generic+default P: latency: 0.85 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86_64_generic+default P: bandwidth: 11021.39 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86_64_generic+default P: bandwidth: 10781.55 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-60158.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 05 06:55:49 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-17461362260.tar.gz` to S3 bucket succeeded

eessi-bot · 2025-05-01T12:29:46Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.05/pr_1062/60159

date	job status	comment
May 01 12:29:45 UTC 2025	submitted	job id `60159` awaits release by job manager
May 01 12:30:17 UTC 2025	released	job awaits launch by Slurm scheduler
May 01 13:38:48 UTC 2025	running	job `60159` is running
May 01 22:10:43 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-60159.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-17461361020.tar.gz` size: 1722 MiB (1805833859 bytes) entries: 81786 modules under 2023.06/software/linux/aarch64/generic/modules/all `R/4.2.2-foss-2022b.lua` `R/4.3.2-gfbf-2023a.lua` software under 2023.06/software/linux/aarch64/generic/software `R/4.2.2-foss-2022b` `R/4.3.2-gfbf-2023a` other under 2023.06/software/linux/aarch64/generic no other files in tarball
May 01 22:10:43 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_generic+default P: perf: 699.521 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_generic+default P: perf: 700.104 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:aarch64_generic+default P: latency: 3.55 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:aarch64_generic+default P: latency: 3.52 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:aarch64_generic+default P: latency: 5.47 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:aarch64_generic+default P: latency: 5.54 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_generic+default P: latency: 0.45 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_generic+default P: latency: 0.45 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_generic+default P: bandwidth: 20660.44 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_generic+default P: bandwidth: 20631.34 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-60159.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 05 06:56:28 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-17461361020.tar.gz` to S3 bucket succeeded

eessi-bot · 2025-05-01T12:29:51Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.05/pr_1062/60160

date	job status	comment
May 01 12:29:50 UTC 2025	submitted	job id `60160` awaits release by job manager
May 01 12:30:19 UTC 2025	released	job awaits launch by Slurm scheduler
May 01 12:35:58 UTC 2025	running	job `60160` is running
May 01 21:13:08 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-60160.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-17461326880.tar.gz` size: 1722 MiB (1806402891 bytes) entries: 81786 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `R/4.2.2-foss-2022b.lua` `R/4.3.2-gfbf-2023a.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `R/4.2.2-foss-2022b` `R/4.3.2-gfbf-2023a` other under 2023.06/software/linux/aarch64/neoverse_n1 no other files in tarball
May 01 21:13:08 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_neoverse_n1+default P: perf: 664.481 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_neoverse_n1+default P: perf: 668.916 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:aarch64_neoverse_n1+default P: latency: 3.62 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:aarch64_neoverse_n1+default P: latency: 3.4 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:aarch64_neoverse_n1+default P: latency: 5.29 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:aarch64_neoverse_n1+default P: latency: 5.48 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_neoverse_n1+default P: latency: 0.46 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_neoverse_n1+default P: latency: 0.46 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_neoverse_n1+default P: bandwidth: 20534.51 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_neoverse_n1+default P: bandwidth: 21024.52 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-60160.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 05 06:57:07 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-17461326880.tar.gz` to S3 bucket succeeded

eessi-bot · 2025-05-01T12:29:56Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.05/pr_1062/60161

date	job status	comment
May 01 12:29:55 UTC 2025	submitted	job id `60161` awaits release by job manager
May 01 12:30:21 UTC 2025	released	job awaits launch by Slurm scheduler
May 01 12:36:00 UTC 2025	running	job `60161` is running
May 01 19:00:25 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-60161.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-17461248830.tar.gz` size: 1722 MiB (1806625446 bytes) entries: 81786 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `R/4.2.2-foss-2022b.lua` `R/4.3.2-gfbf-2023a.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `R/4.2.2-foss-2022b` `R/4.3.2-gfbf-2023a` other under 2023.06/software/linux/aarch64/neoverse_v1 no other files in tarball
May 01 19:00:25 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_neoverse_v1+default P: perf: 981.404 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_neoverse_v1+default P: perf: 936.808 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:aarch64_neoverse_v1+default P: latency: 3.05 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:aarch64_neoverse_v1+default P: latency: 3.18 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:aarch64_neoverse_v1+default P: latency: 4.37 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:aarch64_neoverse_v1+default P: latency: 4.34 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_neoverse_v1+default P: latency: 0.42 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_neoverse_v1+default P: latency: 0.41 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_neoverse_v1+default P: bandwidth: 29377.46 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_neoverse_v1+default P: bandwidth: 28443.33 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-60161.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 05 06:57:46 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-17461248830.tar.gz` to S3 bucket succeeded

eessi-bot-toprichard · 2025-05-05T06:52:31Z

Label bot:deploy has been set by user boegel, but this person does not have permission to trigger deployments

boegel · 2025-05-05T09:06:55Z

All staging PRs merged, so merging this too

eessi-bot · 2025-05-05T09:07:22Z

PR merged! Moved ['/project/def-users/SHARED/jobs/2025.05/pr_1062/60154', '/project/def-users/SHARED/jobs/2025.05/pr_1062/60155', '/project/def-users/SHARED/jobs/2025.05/pr_1062/60156', '/project/def-users/SHARED/jobs/2025.05/pr_1062/60157', '/project/def-users/SHARED/jobs/2025.05/pr_1062/60158', '/project/def-users/SHARED/jobs/2025.05/pr_1062/60159', '/project/def-users/SHARED/jobs/2025.05/pr_1062/60160', '/project/def-users/SHARED/jobs/2025.05/pr_1062/60161'] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.05.05

eessi-bot · 2025-05-05T09:07:23Z

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.05.05

gpu-bot-ugent · 2025-05-05T09:07:23Z

PR merged! Moved [] to /scratch/gent/vo/002/gvo00211/SHARED/trash_bin/EESSI/software-layer/2025.05.05

bedroge · 2025-05-06T07:51:46Z

Cleaned up the old installations by running the following:

cvmfs_server transaction software.eessi.io

rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/generic/software/R/4.2.2-foss-2022b
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/R/4.2.2-foss-2022b
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/skylake_avx512/software/R/4.2.2-foss-2022b
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen2/software/R/4.2.2-foss-2022b
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen3/software/R/4.2.2-foss-2022b
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/R/4.2.2-foss-2022b
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_n1/software/R/4.2.2-foss-2022b
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/R/4.2.2-foss-2022b

rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/generic/software/R/4.3.2-gfbf-2023a
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/R/4.3.2-gfbf-2023a
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/skylake_avx512/software/R/4.3.2-gfbf-2023a
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen2/software/R/4.3.2-gfbf-2023a
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/R/4.3.2-gfbf-2023a
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_n1/software/R/4.3.2-gfbf-2023a
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/R/4.3.2-gfbf-2023a

cd /cvmfs/software.eessi.io/versions

tar -xzf /srv/tmp/tarballs/eessi-2023.06-software-linux-x86_64-amd-zen2-17461402730.tar.gz
tar -xzf /srv/tmp/tarballs/eessi-2023.06-software-linux-x86_64-amd-zen3-17461303570.tar.gz
tar -xzf /srv/tmp/tarballs/eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-17461319630.tar.gz
tar -xzf /srv/tmp/tarballs/eessi-2023.06-software-linux-x86_64-intel-haswell-17461332720.tar.gz
tar -xzf /srv/tmp/tarballs/eessi-2023.06-software-linux-x86_64-generic-17461362260.tar.gz
tar -xzf /srv/tmp/tarballs/eessi-2023.06-software-linux-aarch64-generic-17461361020.tar.gz
tar -xzf /srv/tmp/tarballs/eessi-2023.06-software-linux-aarch64-neoverse_n1-17461326880.tar.gz
tar -xzf /srv/tmp/tarballs/eessi-2023.06-software-linux-aarch64-neoverse_v1-17461248830.tar.gz

cd

cvmfs_server diff --worktree software.eessi.io >> PR1062-diff.txt
cvmfs_server publish -m "rebuilds of R 4.2.2 and 4.3.2, PR 1062" software.eessi.io

Rebuild R 4.2.2 to include CVE patch

f1bf1fe

bedroge added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label May 1, 2025

also rebuild R 4.3.2

b362a0b

bedroge changed the title ~~Rebuild R 4.2.2 to include patch for CVE~~ Rebuild R 4.2.2 and 4.3.2 to include patch for CVE May 1, 2025

bedroge added ready-to-deploy Mark a PR as ready to deploy ready-to-review labels May 2, 2025

bedroge mentioned this pull request May 3, 2025

{2023.06}[icelake,cascadelake] EasyStacks batch 11: 049 #1064

Merged

boegel added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels May 5, 2025

boegel approved these changes May 5, 2025

View reviewed changes

boegel merged commit 169b4e2 into EESSI:2023.06-software.eessi.io May 5, 2025
62 checks passed

bedroge deleted the rebuild_r_4.2.2 branch May 6, 2025 07:48

Rebuild R 4.2.2 and 4.3.2 to include patch for CVE #1062

Rebuild R 4.2.2 and 4.3.2 to include patch for CVE #1062

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