{2023.06}[2023a,a64fx] second batch of apps originally built with EB 4.9.1 #1060

trz42 · 2025-05-01T11:57:22Z

Removed det_submit_opts.py as using it across multiple bot instances seems impractical.

Increased walltime limit for jobs on Deucalion to two days.

…may be installed in different locations seems impractical

…4.9.1

eessi-bot · 2025-05-01T11:57:26Z

Instance eessi-bot-mc-aws is configured to build for:

architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphirerapids, x86_64/intel/skylake_avx512, x86_64/intel/cascadelake, x86_64/intel/icelake, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

eessi-bot · 2025-05-01T11:57:26Z

Instance eessi-bot-mc-azure is configured to build for:

architectures: x86_64/amd/zen4
repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

eessi-bot-deucalion · 2025-05-01T11:57:26Z

Instance eessi-bot-deucalion is configured to build for:

architectures: aarch64/a64fx
repositories: eessi.io-2023.06-software

eessi-bot-surf · 2025-05-01T11:57:27Z

Instance eessi-bot-surf is configured to build for:

architectures: x86_64/amd/zen4, x86_64/amd/zen2
repositories: eessi-hpc.org-2023.06-software, eessi.io-2023.06-software, eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat

gpu-bot-ugent · 2025-05-01T11:57:27Z

Instance eessi-bot-vsc-ugent is configured to build for:

architectures: x86_64/amd/zen3
repositories: eessi-hpc.org-2023.06-software, eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

trz42 · 2025-05-01T11:58:18Z

bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

eessi-bot · 2025-05-01T11:58:20Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-bot · 2025-05-01T11:58:21Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-bot-deucalion · 2025-05-01T11:58:21Z

Updates by the bot instance eessi-bot-deucalion (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- submitted job 412389, for details & status see {2023.06}[2023a,a64fx] second batch of apps originally built with EB 4.9.1 #1060 (comment)

eessi-bot-surf · 2025-05-01T11:58:21Z

Updates by the bot instance eessi-bot-surf (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

gpu-bot-ugent · 2025-05-01T11:58:21Z

Updates by the bot instance eessi-bot-vsc-ugent (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-bot-deucalion · 2025-05-01T11:58:26Z

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.05/pr_1060/412389

failed with some file writing error

== 2025-05-01 14:27:11,920 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:111 in caller_info): Build of /tmp/eb-7s_fa6ea/eb-hdgdeafs/files_commit_f9cfe6ac7d9019970c2be3e8b09db4d846cf005a/R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb failed (err: "build failed (first 300 chars): Unexpected error occurred when trying to download https://bioconductor.org/packages/3.18/data/experiment/src/contrib/ccdata_1.28.0.tar.gz to /home/eessibot/new-bot/shared/easybuild/sources/r/R-bundle-Bioconductor/extensions/ccdata_1.28.0.tar.gz: 'Failed to write to /home/eessibot/new-bot/shared/easy") (at easybuild/main.py:178 in build_and_install_software)

date	job status	comment
May 01 11:58:25 UTC 2025	submitted	job id `412389` awaits release by job manager
May 01 11:58:50 UTC 2025	released	job awaits launch by Slurm scheduler
May 01 11:59:53 UTC 2025	running	job `412389` is running
May 01 13:50:39 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-412389.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-a64fx-17461068820.tar.gz` size: 50 MiB (52972503 bytes) entries: 1491 modules under 2023.06/software/linux/aarch64/a64fx/modules/all `Arrow/14.0.1-gfbf-2023a.lua` `RapidJSON/1.1.0-20230928-GCCcore-12.3.0.lua` `arrow-R/14.0.1-foss-2023a-R-4.3.2.lua` `utf8proc/2.8.0-GCCcore-12.3.0.lua` software under 2023.06/software/linux/aarch64/a64fx/software `Arrow/14.0.1-gfbf-2023a` `RapidJSON/1.1.0-20230928-GCCcore-12.3.0` `arrow-R/14.0.1-foss-2023a-R-4.3.2` `utf8proc/2.8.0-GCCcore-12.3.0` other under 2023.06/software/linux/aarch64/a64fx no other files in tarball
May 01 13:50:39 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] (1/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (2/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (3/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (4/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ OK ] (5/9) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default P: perf: 575.181 timesteps/s (r:0, l:None, u:None) [ OK ] (6/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_a64fx+default P: latency: 1.69 us (r:0, l:None, u:None) [ OK ] (7/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default P: latency: 1.72 us (r:0, l:None, u:None) [ OK ] (8/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8818.87 MB/s (r:0, l:None, u:None) [ OK ] (9/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8128.45 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 5/9 test case(s) from 9 check(s) (0 failure(s), 4 skipped, 0 aborted) Details ✅ job output file `slurm-412389.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

trz42 · 2025-05-20T08:36:52Z

Just retry to build...
bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

eessi-bot · 2025-05-20T08:36:55Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-bot-deucalion · 2025-05-20T08:36:55Z

Updates by the bot instance eessi-bot-deucalion (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- submitted job 433268, for details & status see {2023.06}[2023a,a64fx] second batch of apps originally built with EB 4.9.1 #1060 (comment)

eessi-bot-surf · 2025-05-20T08:36:56Z

Updates by the bot instance eessi-bot-surf (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-bot-toprichard · 2025-05-20T08:36:56Z

Updates by the bot instance rt-Grace-jr (click for details)

account trz42 has NO permission to send commands to the bot

eessi-bot-deucalion · 2025-05-20T08:37:02Z

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.05/pr_1060/433268

failed because of checksum error for ccdata (extension to R)
copied the sources manually from the AWS cluster to Deucalion

date	job status	comment
May 20 08:37:00 UTC 2025	submitted	job id `433268` awaits release by job manager
May 20 08:37:35 UTC 2025	released	job awaits launch by Slurm scheduler
May 20 08:38:37 UTC 2025	running	job `433268` is running
May 20 10:16:35 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-433268.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-a64fx-17477356920.tar.gz` size: 50 MiB (52979974 bytes) entries: 1492 modules under 2023.06/software/linux/aarch64/a64fx/modules/all `Arrow/14.0.1-gfbf-2023a.lua` `RapidJSON/1.1.0-20230928-GCCcore-12.3.0.lua` `arrow-R/14.0.1-foss-2023a-R-4.3.2.lua` `utf8proc/2.8.0-GCCcore-12.3.0.lua` software under 2023.06/software/linux/aarch64/a64fx/software `Arrow/14.0.1-gfbf-2023a` `RapidJSON/1.1.0-20230928-GCCcore-12.3.0` `arrow-R/14.0.1-foss-2023a-R-4.3.2` `utf8proc/2.8.0-GCCcore-12.3.0` other under 2023.06/software/linux/aarch64/a64fx `2023.06/init/easybuild/eb_hooks.py`
May 20 10:16:35 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] (1/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (2/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (3/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (4/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ OK ] (5/9) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default P: perf: 549.451 timesteps/s (r:0, l:None, u:None) [ OK ] (6/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_a64fx+default P: latency: 1.79 us (r:0, l:None, u:None) [ OK ] (7/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default P: latency: 1.85 us (r:0, l:None, u:None) [ OK ] (8/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 7792.17 MB/s (r:0, l:None, u:None) [ OK ] (9/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default P: bandwidth: 7744.55 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 5/9 test case(s) from 9 check(s) (0 failure(s), 4 skipped, 0 aborted) Details ✅ job output file `slurm-433268.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

trz42 · 2025-05-22T09:21:36Z

Retry...
bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

eessi-bot · 2025-05-22T09:21:39Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-bot-deucalion · 2025-05-22T09:21:40Z

Updates by the bot instance eessi-bot-deucalion (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- submitted job 435181, for details & status see {2023.06}[2023a,a64fx] second batch of apps originally built with EB 4.9.1 #1060 (comment)

eessi-bot-surf · 2025-05-22T09:21:40Z

Updates by the bot instance eessi-bot-surf (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-bot-toprichard · 2025-05-22T09:21:40Z

Updates by the bot instance rt-Grace-jr (click for details)

account trz42 has NO permission to send commands to the bot

eessi-bot-deucalion · 2025-05-22T09:21:46Z

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.05/pr_1060/435181

failed to download sources for extension RcisTarget_1.22.0.tar

date	job status	comment
May 22 09:21:45 UTC 2025	submitted	job id `435181` awaits release by job manager
May 22 09:22:32 UTC 2025	released	job awaits launch by Slurm scheduler
May 22 09:23:36 UTC 2025	running	job `435181` is running
May 22 11:02:23 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-435181.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-a64fx-17479112640.tar.gz` size: 50 MiB (52963905 bytes) entries: 1491 modules under 2023.06/software/linux/aarch64/a64fx/modules/all `Arrow/14.0.1-gfbf-2023a.lua` `RapidJSON/1.1.0-20230928-GCCcore-12.3.0.lua` `arrow-R/14.0.1-foss-2023a-R-4.3.2.lua` `utf8proc/2.8.0-GCCcore-12.3.0.lua` software under 2023.06/software/linux/aarch64/a64fx/software `Arrow/14.0.1-gfbf-2023a` `RapidJSON/1.1.0-20230928-GCCcore-12.3.0` `arrow-R/14.0.1-foss-2023a-R-4.3.2` `utf8proc/2.8.0-GCCcore-12.3.0` other under 2023.06/software/linux/aarch64/a64fx no other files in tarball
May 22 11:02:23 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] (1/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (2/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (3/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (4/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ OK ] (5/9) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default P: perf: 579.987 timesteps/s (r:0, l:None, u:None) [ OK ] (6/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_a64fx+default P: latency: 1.67 us (r:0, l:None, u:None) [ OK ] (7/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default P: latency: 1.83 us (r:0, l:None, u:None) [ OK ] (8/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 7873.96 MB/s (r:0, l:None, u:None) [ OK ] (9/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default P: bandwidth: 7705.43 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 5/9 test case(s) from 9 check(s) (0 failure(s), 4 skipped, 0 aborted) Details ✅ job output file `slurm-435181.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

trz42 · 2025-05-23T10:51:47Z

Retry...
bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

eessi-bot · 2025-05-23T10:51:50Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-bot-deucalion · 2025-05-23T10:51:51Z

Updates by the bot instance eessi-bot-deucalion (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- submitted job 435960, for details & status see {2023.06}[2023a,a64fx] second batch of apps originally built with EB 4.9.1 #1060 (comment)

eessi-bot-surf · 2025-05-23T10:51:51Z

Updates by the bot instance eessi-bot-surf (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-bot-toprichard · 2025-05-23T10:51:51Z

Updates by the bot instance rt-Grace-jr (click for details)

account trz42 has NO permission to send commands to the bot

eessi-bot-deucalion · 2025-05-23T10:51:57Z

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.05/pr_1060/435960

date	job status	comment
May 23 10:51:56 UTC 2025	submitted	job id `435960` awaits release by job manager
May 23 10:52:04 UTC 2025	released	job awaits launch by Slurm scheduler
May 23 10:53:10 UTC 2025	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job435960.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
May 23 10:53:10 UTC 2025	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job435960.test` does not exist in job directory, or parsing it failed.

…-layer into 2023.06-a64fx-2023a-eb491-apps-2

trz42 · 2025-05-23T10:54:29Z

Just ensured to use up-to-date PR...
bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

eessi-bot · 2025-05-23T10:54:32Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-bot-surf · 2025-05-23T10:54:32Z

Updates by the bot instance eessi-bot-surf (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-bot-deucalion · 2025-05-23T10:54:32Z

Updates by the bot instance eessi-bot-deucalion (click for details)

received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42
- expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- submitted job 435963, for details & status see {2023.06}[2023a,a64fx] second batch of apps originally built with EB 4.9.1 #1060 (comment)

eessi-bot-toprichard · 2025-05-23T10:54:33Z

Updates by the bot instance rt-Grace-jr (click for details)

account trz42 has NO permission to send commands to the bot

eessi-bot-deucalion · 2025-05-23T10:54:39Z

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.05/pr_1060/435963

date	job status	comment
May 23 10:54:38 UTC 2025	submitted	job id `435963` awaits release by job manager
May 23 10:55:18 UTC 2025	released	job awaits launch by Slurm scheduler
May 23 10:56:23 UTC 2025	running	job `435963` is running
May 25 16:27:17 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-435963.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-a64fx-17480655530.tar.gz` size: 8772 MiB (9199102226 bytes) entries: 50583 modules under 2023.06/software/linux/aarch64/a64fx/modules/all `Arrow/14.0.1-gfbf-2023a.lua` `BLAST+/2.14.1-gompi-2023a.lua` `Biopython/1.83-foss-2023a.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `GATK/4.5.0.0-GCCcore-12.3.0-Java-17.lua` `ISA-L/2.30.0-GCCcore-12.3.0.lua` `Java/.modulerc.lua` `Java/17.0.6.lua` `LMDB/0.9.31-GCCcore-12.3.0.lua` `MCL/22.282-GCCcore-12.3.0.lua` `MMseqs2/14-7e284-gompi-2023a.lua` `OrthoFinder/2.5.5-foss-2023a.lua` `Pysam/0.22.0-GCC-12.3.0.lua` `R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2.lua` `RapidJSON/1.1.0-20230928-GCCcore-12.3.0.lua` `Valgrind/3.21.0-gompi-2023a.lua` `WhatsHap/2.2-foss-2023a.lua` `arrow-R/14.0.1-foss-2023a-R-4.3.2.lua` `cimfomfa/22.273-GCCcore-12.3.0.lua` `cpio/2.15-GCCcore-12.3.0.lua` `ipympl/0.9.3-gfbf-2023a.lua` `pyfaidx/0.8.1.1-GCCcore-12.3.0.lua` `python-isal/1.1.0-GCCcore-12.3.0.lua` `utf8proc/2.8.0-GCCcore-12.3.0.lua` software under 2023.06/software/linux/aarch64/a64fx/software `Arrow/14.0.1-gfbf-2023a` `BLAST+/2.14.1-gompi-2023a` `Biopython/1.83-foss-2023a` `DIAMOND/2.1.8-GCC-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `GATK/4.5.0.0-GCCcore-12.3.0-Java-17` `ISA-L/2.30.0-GCCcore-12.3.0` `Java/17.0.6` `LMDB/0.9.31-GCCcore-12.3.0` `MCL/22.282-GCCcore-12.3.0` `MMseqs2/14-7e284-gompi-2023a` `OrthoFinder/2.5.5-foss-2023a` `Pysam/0.22.0-GCC-12.3.0` `R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2` `RapidJSON/1.1.0-20230928-GCCcore-12.3.0` `Valgrind/3.21.0-gompi-2023a` `WhatsHap/2.2-foss-2023a` `arrow-R/14.0.1-foss-2023a-R-4.3.2` `cimfomfa/22.273-GCCcore-12.3.0` `cpio/2.15-GCCcore-12.3.0` `ipympl/0.9.3-gfbf-2023a` `pyfaidx/0.8.1.1-GCCcore-12.3.0` `python-isal/1.1.0-GCCcore-12.3.0` `utf8proc/2.8.0-GCCcore-12.3.0` other under 2023.06/software/linux/aarch64/a64fx no other files in tarball
May 25 16:27:17 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] (1/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (2/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (3/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] (4/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ OK ] (5/9) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default P: perf: 578.248 timesteps/s (r:0, l:None, u:None) [ OK ] (6/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_a64fx+default P: latency: 1.66 us (r:0, l:None, u:None) [ OK ] (7/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default P: latency: 1.74 us (r:0, l:None, u:None) [ OK ] (8/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8385.99 MB/s (r:0, l:None, u:None) [ OK ] (9/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8451.52 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 5/9 test case(s) from 9 check(s) (0 failure(s), 4 skipped, 0 aborted) Details ✅ job output file `slurm-435963.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 25 18:15:22 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-a64fx-17480655530.tar.gz` to S3 bucket succeeded

eessi-bot-toprichard · 2025-05-25T18:13:24Z

Label bot:deploy has been set by user ocaisa, but this person does not have permission to trigger deployments

ocaisa · 2025-05-25T18:47:24Z

Staging PR merged

eessi-bot · 2025-05-25T18:47:34Z

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.05.25

eessi-bot-deucalion · 2025-05-25T18:47:34Z

PR merged! Moved ['/home/eessibot/new-bot/jobs/2025.05/pr_1060/435181', '/home/eessibot/new-bot/jobs/2025.05/pr_1060/433268', '/home/eessibot/new-bot/jobs/2025.05/pr_1060/435963', '/home/eessibot/new-bot/jobs/2025.05/pr_1060/435960', '/home/eessibot/new-bot/jobs/2025.05/pr_1060/412389'] to /home/eessibot/new-bot/trash-bin/EESSI/software-layer/2025.05.25

truib added 2 commits May 1, 2025 13:50

using det_submit_opts across different bot instances where easybuild …

1e47314

…may be installed in different locations seems impractical

{2023.06}[2023a,a64fx] second batch of apps originally built with EB …

b4aee77

…4.9.1

trz42 added 2023.06-software.eessi.io 2023.06 version of software.eessi.io a64fx labels May 1, 2025

trz42 mentioned this pull request May 1, 2025

Notes on building the stack for Fujitsu A64FX #1024

Open

2 tasks

Merge branch '2023.06-software.eessi.io' of github-trz:EESSI/software…

ad64ede

…-layer into 2023.06-a64fx-2023a-eb491-apps-2

trz42 added the ready-to-deploy Mark a PR as ready to deploy label May 25, 2025

ocaisa approved these changes May 25, 2025

View reviewed changes

ocaisa added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels May 25, 2025

ocaisa merged commit b77f4be into EESSI:2023.06-software.eessi.io May 25, 2025
67 checks passed

{2023.06}[2023a,a64fx] second batch of apps originally built with EB 4.9.1 #1060

{2023.06}[2023a,a64fx] second batch of apps originally built with EB 4.9.1 #1060

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