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Merged
merged 3 commits into from
May 1, 2025
Merged

{2023.06}[2023a,a64fx] apps originally built with EB 4.9.1 #1049

merged 3 commits into from
May 1, 2025

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trz42
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@trz42 trz42 commented Apr 27, 2025 •
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Apps built originally with EB 4.9.1 plus two exceptions:

  • R-bundle-CRAN seems to have been built originally with EB 4.9.4
  • R-bundle-Bioconductor needs to use a commit from a PR that was only made available with EB 5.0.0 (we use the commit to avoid rebuilding the package later; currently, rebuilding doesn't work on a64fx)
    • will build R-bundle-Bioconductor in a follow-up PR

@trz42 trz42 added 2023.06-software.eessi.io 2023.06 version of software.eessi.io a64fx labels Apr 27, 2025
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eessi-bot bot commented Apr 27, 2025

Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphirerapids, x86_64/intel/skylake_avx512, x86_64/intel/cascadelake, x86_64/intel/icelake, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

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eessi-bot bot commented Apr 27, 2025

Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

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Instance eessi-bot-deucalion is configured to build for:

  • architectures: aarch64/a64fx
  • repositories: eessi.io-2023.06-software

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gpu-bot-ugent bot commented Apr 27, 2025

Instance eessi-bot-vsc-ugent is configured to build for:

  • architectures: x86_64/amd/zen3
  • repositories: eessi-hpc.org-2023.06-software, eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

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Instance rt-Grace-jr is configured to build for:

  • architectures: aarch64/nvidia/grace
  • repositories: eessi.io-2023.06-software

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Instance eessi-bot-surf is configured to build for:

  • architectures: x86_64/amd/zen4, x86_64/amd/zen2
  • repositories: eessi-hpc.org-2023.06-software, eessi.io-2023.06-software, eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat

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trz42 commented Apr 27, 2025

bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

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eessi-bot-deucalion bot commented Apr 27, 2025 •
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New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.04/pr_1049/411710

date job status comment
Apr 27 17:02:08 UTC 2025 submitted job id 411710 awaits release by job manager
Apr 27 17:03:06 UTC 2025 released job awaits launch by Slurm scheduler
Apr 27 17:04:09 UTC 2025 running job 411710 is running
Apr 30 06:29:32 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-411710.out
✅ no message matching FATAL:
❌ found message matching ERROR:
✅ no message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
No artefacts were created or found.
Apr 30 06:29:32 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ SKIP ] (1/5) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed
[ SKIP ] (2/5) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed
[ OK ] (3/5) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default
P: latency: 1.75 us (r:0, l:None, u:None)
[ OK ] (4/5) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default
P: bandwidth: 8017.05 MB/s (r:0, l:None, u:None)
[ OK ] (5/5) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default
P: perf: 579.553 timesteps/s (r:0, l:None, u:None)
[ PASSED ] Ran 3/5 test case(s) from 5 check(s) (0 failure(s), 2 skipped, 0 aborted)
Details
✅ job output file slurm-411710.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@trz42 trz42 mentioned this pull request Apr 27, 2025
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trz42 commented Apr 30, 2025

Rebuild after shutdown and changed bot cfg and PR to submit job with longer walltime limit...
bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

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New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.04/pr_1049/411960

  • job was not submitted with extended walltime. log file contains 
    [20250430-T07:54:38] submit_job(): not updating job.slurm_opts: cannot import function det_submit_opts from module det_submit_opts
date job status comment
Apr 30 06:54:39 UTC 2025 submitted job id 411960 awaits release by job manager
Apr 30 06:54:53 UTC 2025 released job awaits launch by Slurm scheduler
Apr 30 06:55:58 UTC 2025 running job 411960 is running
Apr 30 07:06:48 UTC 2025 finished
🤷 UNKNOWN (click triangle for detailed information)
  • Job results file _bot_job411960.result does not exist in job directory, or parsing it failed.
  • No artefacts were found/reported.
Apr 30 07:06:48 UTC 2025 test result
🤷 UNKNOWN (click triangle for detailed information)
  • Job test file _bot_job411960.test does not exist in job directory, or parsing it failed.

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trz42 commented Apr 30, 2025

Try again after adding some log output to the import...
bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.04/pr_1049/411961

date job status comment
Apr 30 07:06:45 UTC 2025 submitted job id 411961 awaits release by job manager
Apr 30 07:07:52 UTC 2025 released job awaits launch by Slurm scheduler
Apr 30 07:08:59 UTC 2025 finished
🤷 UNKNOWN (click triangle for detailed information)
  • Job results file _bot_job411961.result does not exist in job directory, or parsing it failed.
  • No artefacts were found/reported.
Apr 30 07:08:59 UTC 2025 test result
🤷 UNKNOWN (click triangle for detailed information)
  • Job test file _bot_job411961.test does not exist in job directory, or parsing it failed.

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trz42 commented Apr 30, 2025

Try again after fixing syntax issue...
bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

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    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

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  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

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New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.04/pr_1049/411962

  • error is 
    [20250430-T08:09:44] submit_job(): not updating job.slurm_opts: cannot import function det_submit_opts from module det_submit_opts: error 'No module named 'easybuild''
date job status comment
Apr 30 07:09:44 UTC 2025 submitted job id 411962 awaits release by job manager
Apr 30 07:10:04 UTC 2025 released job awaits launch by Slurm scheduler
Apr 30 07:11:10 UTC 2025 running job 411962 is running
May 01 05:51:06 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-411962.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-17460780320.tar.gzsize: 1584 MiB (1661152890 bytes)
entries: 68099
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
R-bundle-CRAN/2023.12-foss-2023a.lua
SAMtools/1.18-GCC-12.3.0.lua
ncdu/1.18-GCC-12.3.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
R-bundle-CRAN/2023.12-foss-2023a
SAMtools/1.18-GCC-12.3.0
ncdu/1.18-GCC-12.3.0
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
May 01 05:51:06 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ SKIP ] (1/5) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed
[ SKIP ] (2/5) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed
[ OK ] (3/5) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default
P: latency: 1.75 us (r:0, l:None, u:None)
[ OK ] (4/5) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default
P: bandwidth: 8709.16 MB/s (r:0, l:None, u:None)
[ OK ] (5/5) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default
P: perf: 580.928 timesteps/s (r:0, l:None, u:None)
[ PASSED ] Ran 3/5 test case(s) from 5 check(s) (0 failure(s), 2 skipped, 0 aborted)
Details
✅ job output file slurm-411962.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
May 01 10:00:05 UTC 2025 uploaded transfer of eessi-2023.06-software-linux-aarch64-a64fx-17460780320.tar.gz to S3 bucket succeeded

@trz42 trz42 added ready-to-deploy Mark a PR as ready to deploy ready-to-review labels May 1, 2025
@bedroge bedroge added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy ready-to-review labels May 1, 2025
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bedroge commented May 1, 2025

Tarball ingested.

@bedroge bedroge merged commit ef73ea9 into EESSI:2023.06-software.eessi.io May 1, 2025
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eessi-bot bot commented May 1, 2025

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.05.01

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eessi-bot bot commented May 1, 2025

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.05.01

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PR merged! Moved ['/home/eessibot/new-bot/jobs/2025.04/pr_1049/411960', '/home/eessibot/new-bot/jobs/2025.04/pr_1049/411710', '/home/eessibot/new-bot/jobs/2025.04/pr_1049/411961', '/home/eessibot/new-bot/jobs/2025.04/pr_1049/411962'] to /home/eessibot/new-bot/trash-bin/EESSI/software-layer/2025.05.01

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gpu-bot-ugent bot commented May 1, 2025

PR merged! Moved [] to /scratch/gent/vo/002/gvo00211/SHARED/trash_bin/EESSI/software-layer/2025.05.01

@trz42 trz42 mentioned this pull request May 12, 2025
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