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trz42
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@trz42 trz42 commented Apr 14, 2025

Adds Cython and all dependencies of TensorFlow to a64fx stack

Abseil/20230125.3-GCCcore-12.3.0
Bazel/6.3.1-GCCcore-12.3.0
Cython/3.0.8-GCCcore-12.3.0
JsonCpp/1.9.5-GCCcore-12.3.0
RE2/2023-08-01-GCCcore-12.3.0
Zip/3.0-GCCcore-12.3.0
dill/0.3.7-GCCcore-12.3.0
flatbuffers-python/23.5.26-GCCcore-12.3.0
flatbuffers/23.5.26-GCCcore-12.3.0
h5py/3.9.0-foss-2023a
mpi4py/3.1.4-gompi-2023a
nsync/1.26.0-GCCcore-12.3.0
pkgconfig/1.5.5-GCCcore-12.3.0-python
protobuf-python/4.24.0-GCCcore-12.3.0
protobuf/24.0-GCCcore-12.3.0

@trz42 trz42 added 2023.06-software.eessi.io 2023.06 version of software.eessi.io a64fx labels Apr 14, 2025
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Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphirerapids, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

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Instance eessi-bot-deucalion is configured to build for:

  • architectures: aarch64/a64fx
  • repositories: eessi.io-2023.06-software

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Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

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Instance eessi-bot-surf is configured to build for:

  • architectures: x86_64/amd/zen4, x86_64/amd/zen2
  • repositories: eessi-hpc.org-2023.06-software, eessi.io-2023.06-software, eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat

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Instance trz42-GH200-jr is configured to build for:

  • architectures: aarch64/nvidia/grace
  • repositories: eessi.io-2023.06-software

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Instance rt-Grace-jr is configured to build for:

  • architectures: aarch64/nvidia/grace
  • repositories: eessi.io-2023.06-software

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trz42 commented Apr 14, 2025

bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

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New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.04/pr_1028/402880

  • Building TensorFlow itself failed due to out of memory. Limited memory requirement for jobs to 28000M.
date job status comment
Apr 14 17:59:09 UTC 2025 submitted job id 402880 awaits release by job manager
Apr 14 17:59:23 UTC 2025 released job awaits launch by Slurm scheduler
Apr 14 18:00:26 UTC 2025 running job 402880 is running
Apr 14 22:00:40 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-402880.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-1744667418.tar.gzsize: 64 MiB (67194113 bytes)
entries: 1927
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
Abseil/20230125.3-GCCcore-12.3.0.lua
Bazel/6.3.1-GCCcore-12.3.0.lua
dill/0.3.7-GCCcore-12.3.0.lua
flatbuffers/23.5.26-GCCcore-12.3.0.lua
flatbuffers-python/23.5.26-GCCcore-12.3.0.lua
h5py/3.9.0-foss-2023a.lua
JsonCpp/1.9.5-GCCcore-12.3.0.lua
mpi4py/3.1.4-gompi-2023a.lua
nsync/1.26.0-GCCcore-12.3.0.lua
pkgconfig/1.5.5-GCCcore-12.3.0-python.lua
protobuf/24.0-GCCcore-12.3.0.lua
protobuf-python/4.24.0-GCCcore-12.3.0.lua
RE2/2023-08-01-GCCcore-12.3.0.lua
Zip/3.0-GCCcore-12.3.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
Abseil/20230125.3-GCCcore-12.3.0
Bazel/6.3.1-GCCcore-12.3.0
dill/0.3.7-GCCcore-12.3.0
flatbuffers/23.5.26-GCCcore-12.3.0
flatbuffers-python/23.5.26-GCCcore-12.3.0
h5py/3.9.0-foss-2023a
JsonCpp/1.9.5-GCCcore-12.3.0
mpi4py/3.1.4-gompi-2023a
nsync/1.26.0-GCCcore-12.3.0
pkgconfig/1.5.5-GCCcore-12.3.0-python
protobuf/24.0-GCCcore-12.3.0
protobuf-python/4.24.0-GCCcore-12.3.0
RE2/2023-08-01-GCCcore-12.3.0
Zip/3.0-GCCcore-12.3.0
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
Apr 14 22:00:40 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] (1/1) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default
P: perf: 573.327 timesteps/s (r:0, l:None, u:None)
[ PASSED ] Ran 1/1 test case(s) from 1 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-402880.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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trz42 commented Apr 15, 2025

Retry after limiting memory requirement...
bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

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New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.04/pr_1028/403093

date job status comment
Apr 15 05:26:13 UTC 2025 submitted job id 403093 awaits release by job manager
Apr 15 05:26:52 UTC 2025 released job awaits launch by Slurm scheduler
Apr 15 05:27:54 UTC 2025 running job 403093 is running
Apr 15 09:21:31 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-403093.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-1744708209.tar.gzsize: 63 MiB (66828865 bytes)
entries: 1927
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
Abseil/20230125.3-GCCcore-12.3.0.lua
Bazel/6.3.1-GCCcore-12.3.0.lua
dill/0.3.7-GCCcore-12.3.0.lua
flatbuffers/23.5.26-GCCcore-12.3.0.lua
flatbuffers-python/23.5.26-GCCcore-12.3.0.lua
h5py/3.9.0-foss-2023a.lua
JsonCpp/1.9.5-GCCcore-12.3.0.lua
mpi4py/3.1.4-gompi-2023a.lua
nsync/1.26.0-GCCcore-12.3.0.lua
pkgconfig/1.5.5-GCCcore-12.3.0-python.lua
protobuf/24.0-GCCcore-12.3.0.lua
protobuf-python/4.24.0-GCCcore-12.3.0.lua
RE2/2023-08-01-GCCcore-12.3.0.lua
Zip/3.0-GCCcore-12.3.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
Abseil/20230125.3-GCCcore-12.3.0
Bazel/6.3.1-GCCcore-12.3.0
dill/0.3.7-GCCcore-12.3.0
flatbuffers/23.5.26-GCCcore-12.3.0
flatbuffers-python/23.5.26-GCCcore-12.3.0
h5py/3.9.0-foss-2023a
JsonCpp/1.9.5-GCCcore-12.3.0
mpi4py/3.1.4-gompi-2023a
nsync/1.26.0-GCCcore-12.3.0
pkgconfig/1.5.5-GCCcore-12.3.0-python
protobuf/24.0-GCCcore-12.3.0
protobuf-python/4.24.0-GCCcore-12.3.0
RE2/2023-08-01-GCCcore-12.3.0
Zip/3.0-GCCcore-12.3.0
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
Apr 15 09:21:31 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] (1/1) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default
P: perf: 36.554 timesteps/s (r:0, l:None, u:None)
[ PASSED ] Ran 1/1 test case(s) from 1 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-403093.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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trz42 commented Apr 15, 2025

Only install dependencies for TensorFlow (other packages incl TF in a subsequent PR)...
bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

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eessi-bot-deucalion bot commented Apr 16, 2025

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.04/pr_1028/404905

  • failed while importing cython in the sanity check (wasn't a problem building interactively)
    == 2025-04-16 16:58:27,838 extension.py:286 WARNING Sanity check for 'Cython' extension failed: command "/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/a64fx/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c "import cython"" failed; output:
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
    ModuleNotFoundError: No module named 'cython'
    
    and
    == 2025-04-16 16:58:28,053 easyblock.py:3636 WARNING Sanity check: sanity check command cython --version exited with code 1 (output: Traceback (most recent call last):
      File "/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/a64fx/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/metadata/__init__.py", line 563, in from_name
        return next(cls.discover(name=name))
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    StopIteration
    
    During handling of the above exception, another exception occurred:
    
    Traceback (most recent call last):
      File "/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/a64fx/software/Cython/3.0.8-GCCcore-12.3.0/bin/cython", line 33, in <module>
        sys.exit(load_entry_point('Cython==3.0.8', 'console_scripts', 'cython')())
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/a64fx/software/Cython/3.0.8-GCCcore-12.3.0/bin/cython", line 22, in importlib_load_entry_point
        for entry_point in distribution(dist_name).entry_points
                           ^^^^^^^^^^^^^^^^^^^^^^^
      File "/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/a64fx/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/metadata/__init__.py", line 981, in distribution
        return Distribution.from_name(distribution_name)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/a64fx/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/metadata/__init__.py", line 565, in from_name
        raise PackageNotFoundError(name)
    importlib.metadata.PackageNotFoundError: No package metadata was found for Cython
    )
    
date job status comment
Apr 16 15:28:24 UTC 2025 submitted job id 404905 awaits release by job manager
Apr 16 15:28:43 UTC 2025 released job awaits launch by Slurm scheduler
Apr 16 15:29:46 UTC 2025 running job 404905 is running
Apr 16 16:08:07 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-404905.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-1744819286.tar.gzsize: 0 MiB (45 bytes)
entries: 0
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
no module files in tarball
software under 2023.06/software/linux/aarch64/a64fx/software
no software packages in tarball
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
Apr 16 16:08:07 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] (1/1) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default
P: perf: 576.969 timesteps/s (r:0, l:None, u:None)
[ PASSED ] Ran 1/1 test case(s) from 1 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-404905.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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trz42 commented Apr 16, 2025

Try a little older version of the Cython ec...
bot: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx

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  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

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gpu-bot-ugent bot commented Apr 16, 2025

Updates by the bot instance eessi-bot-vsc-ugent (click for details)
  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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Updates by the bot instance eessi-bot-surf (click for details)
  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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Updates by the bot instance trz42-GH200-jr (click for details)
  • received bot command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx from trz42

    • expanded format: build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx
  • handling command build instance:eessi-bot-deucalion repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

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eessi-bot-deucalion bot commented Apr 16, 2025

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.04/pr_1028/405095

date job status comment
Apr 16 19:13:39 UTC 2025 submitted job id 405095 awaits release by job manager
Apr 16 19:13:55 UTC 2025 released job awaits launch by Slurm scheduler
Apr 16 19:14:57 UTC 2025 running job 405095 is running
Apr 16 20:46:14 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-405095.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-1744835984.tar.gzsize: 76 MiB (80415563 bytes)
entries: 2431
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
Abseil/20230125.3-GCCcore-12.3.0.lua
Bazel/6.3.1-GCCcore-12.3.0.lua
Cython/3.0.8-GCCcore-12.3.0.lua
JsonCpp/1.9.5-GCCcore-12.3.0.lua
RE2/2023-08-01-GCCcore-12.3.0.lua
Zip/3.0-GCCcore-12.3.0.lua
dill/0.3.7-GCCcore-12.3.0.lua
flatbuffers-python/23.5.26-GCCcore-12.3.0.lua
flatbuffers/23.5.26-GCCcore-12.3.0.lua
h5py/3.9.0-foss-2023a.lua
mpi4py/3.1.4-gompi-2023a.lua
nsync/1.26.0-GCCcore-12.3.0.lua
pkgconfig/1.5.5-GCCcore-12.3.0-python.lua
protobuf-python/4.24.0-GCCcore-12.3.0.lua
protobuf/24.0-GCCcore-12.3.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
Abseil/20230125.3-GCCcore-12.3.0
Bazel/6.3.1-GCCcore-12.3.0
Cython/3.0.8-GCCcore-12.3.0
JsonCpp/1.9.5-GCCcore-12.3.0
RE2/2023-08-01-GCCcore-12.3.0
Zip/3.0-GCCcore-12.3.0
dill/0.3.7-GCCcore-12.3.0
flatbuffers-python/23.5.26-GCCcore-12.3.0
flatbuffers/23.5.26-GCCcore-12.3.0
h5py/3.9.0-foss-2023a
mpi4py/3.1.4-gompi-2023a
nsync/1.26.0-GCCcore-12.3.0
pkgconfig/1.5.5-GCCcore-12.3.0-python
protobuf-python/4.24.0-GCCcore-12.3.0
protobuf/24.0-GCCcore-12.3.0
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
Apr 16 20:46:14 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] (1/1) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default
P: perf: 578.625 timesteps/s (r:0, l:None, u:None)
[ PASSED ] Ran 1/1 test case(s) from 1 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-405095.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Apr 19 19:20:26 UTC 2025 uploaded transfer of eessi-2023.06-software-linux-aarch64-a64fx-1744835984.tar.gz to S3 bucket succeeded

@trz42 trz42 added ready-to-deploy Mark a PR as ready to deploy ready-to-review labels Apr 16, 2025
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Lgtm!

@casparvl casparvl added the bot:deploy Ask bot to deploy missing software installations to EESSI label Apr 17, 2025
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Hm, it doesn't seem to listen to me for the deploy, maybe you need to do it yourself :)

@trz42 trz42 removed bot:deploy Ask bot to deploy missing software installations to EESSI ready-to-deploy Mark a PR as ready to deploy ready-to-review labels Apr 19, 2025
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trz42 commented Apr 19, 2025

Hm, it doesn't seem to listen to me for the deploy, maybe you need to do it yourself :)

Likely some problem with the bot.

@trz42 trz42 added the bot:deploy Ask bot to deploy missing software installations to EESSI label Apr 19, 2025
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trz42 commented Apr 19, 2025

Tarball ingested and software available via /cvmfs.

@trz42 trz42 merged commit dae505d into EESSI:2023.06-software.eessi.io Apr 20, 2025
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eessi-bot bot commented Apr 20, 2025

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.04.20

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PR merged! Moved ['/home/eessibot/new-bot/jobs/2025.04/pr_1028/404905', '/home/eessibot/new-bot/jobs/2025.04/pr_1028/403093', '/home/eessibot/new-bot/jobs/2025.04/pr_1028/403716', '/home/eessibot/new-bot/jobs/2025.04/pr_1028/402880', '/home/eessibot/new-bot/jobs/2025.04/pr_1028/405095', '/home/eessibot/new-bot/jobs/2025.04/pr_1028/403809'] to /home/eessibot/new-bot/trash-bin/EESSI/software-layer/2025.04.20

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gpu-bot-ugent bot commented Apr 20, 2025

PR merged! Moved [] to /scratch/gent/vo/002/gvo00211/SHARED/trash_bin/EESSI/software-layer/2025.04.20

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eessi-bot bot commented Apr 20, 2025

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.04.20

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3 participants