Main scripts used in the analysis of the single-cell RNA-seq data of ANCA-associated glomerulonephritis as described in Vegting et al., 2024. The scripts can be found in ./scRNASeq/Processing/20221220_AllSamples_v4/Code.
The general organization of this repository follows (an earlier version) of the guidelines and structure of our recently published environment for reproducible computational research (Van Kampen, Mahamune et al., ENCORE: a practical implementation to improve reproducibility and transparency of computational research, Nature Communications, 2024). However, only the relevant code can be found in this repository.