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Some questions regarding the content of the output files generated by Kraken2

Status: Open.

#989 In DerrickWood/kraken2;

· flyc2000-cmyk opened on Sep 9, 2025

Kraken2 now discards FASTA header "description" fields (since 2.1.4 or 2.1.5)

Status: Open.

#988 In DerrickWood/kraken2;

· pvanheus opened on Sep 5, 2025

Kraken2 latest version is wrong in bioconda

Status: Open.

#987 In DerrickWood/kraken2;

· Lafond-LapalmeJ opened on Sep 3, 2025

<code>k2 build</code> hangs during final steps due to total_sequences disagreement

Status: Open.

#986 In DerrickWood/kraken2;

· AlexTate opened on Aug 27, 2025

<code>k2 add-to-library</code> sequence ID format requirements differ from <code>kraken2-build --add-to-library</code>

Status: Open.

#985 In DerrickWood/kraken2;

· AlexTate opened on Aug 27, 2025

Would adding the nt_euk database be possible?

Status: Open.

#984 In DerrickWood/kraken2;

· lyisrae1 opened on Aug 24, 2025

The results of Kraken2 analysis in the report file (*.kraken2.report.txt) differ between two repeated runs.

Status: Open.

#983 In DerrickWood/kraken2;

· anzhi525 opened on Aug 19, 2025

<code>k2 build</code> deadlocks on Popen.stdin.write()

Status: Open.

#982 In DerrickWood/kraken2;

· AlexTate opened on Aug 13, 2025

Add parameter to get tool version

Status: Open.

#981 In DerrickWood/kraken2;

· OlivierCoen opened on Jul 28, 2025

Issue when inspecting database

Status: Open.

#980 In DerrickWood/kraken2;

· OlivierCoen opened on Jul 28, 2025

Combining bacterial and fungal classification reports

Status: Open.

#979 In DerrickWood/kraken2;

· beantkapoor786 opened on Jul 24, 2025

Parameter setup for use with Oxford Nanopore Technology MinION (R10.4.1)

Status: Open.

#978 In DerrickWood/kraken2;

· d3lmakO opened on Jul 15, 2025