Manage direct dependency versions #583
                
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This PR performs several updates to GuardDog's direct dependencies:
urllib3=2.3.0-->urllib3=^2.5.0(this will eliminate all open security warnings)semgrep = ^1.102.0-->semgrep = 1.121.0(latest versions are known to break certain unit tests)setuptoolsdirect dependencyclick-option-groupandcoloramadirect dependenciespyproject.tomlfor easier maintenanceWe can periodically revisit updating the hardcoded Semgrep version.