I have a lot of files/images after 24h of microscope live imaging. It's very annoying to manage the well, position manually, so I wrote these little functions.
The first one MakeFolders.sh is for making a folder for each well, each position.
- copy and paste this file to the path where you want to keep your images at
- open terminal, navigate to the path
- vim MakeFolders.sh to edit the name based on plate setting
- sh MakeFolders.sh
The second one OrderFile.sh is after exporting all images, and saved in each cooresponding folder.
- copy paste this file to the path of your folders
- open terminal, navigate to the path
- vim OrderFile.sh to edit the name of your files. For those with scale added, it will be ch01/ch00_SV.tif. Otherwise it's ch01/ch00.tif
- sh OrderFile.sh