Pathway to v1.0

.gitattributes

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+uto eol=lf
+*.{cmd,[cC][mM][dD]} text eol=crlf
+*.{bat,[bB][aA][tT]} text eol=crlf

.github/workflows/Input-list_python.yml

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+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+# Also use advice from: https://github.com/Kludex/update-file
+
+name: Input-Keys, Python script
+
+on:
+  push:
+    branches: [ development ]
+  pull_request:
+    branches: [ development ]
+
+jobs:
+  update-file:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+    - name: Create the MD file listing the input keys
+      run: |
+        python ReadInput.py
+    - name: Update Input table
+      uses: test-room-7/action-update-file@v1
+      with:
+        file-path: ParametersList-py.md
+        commit-msg: Automatic update of Input parameter list
+        github-token: ${{ secrets.GITHUB_TOKEN }}
+    #    python-version: ${{ matrix.python-version }}
+   # - name: Install dependencies
+   #   run: |
+   #     python -m pip install --upgrade pip
+   #     python -m pip install flake8 pytest
+   #     if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+   # - name: Lint with flake8
+   #   run: |
+   #     # stop the build if there are Python syntax errors or undefined names
+   #     flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+   #     # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+   #     flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    #- name: Create the MD file listing the input keys
+    #  run: |
+    #    python ReadInput.py

.github/workflows/build-documentation.yml

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+# This is a basic workflow to help you get started with Actions
+
+name: Documentation
+
+# Controls when the action will run. Triggers the workflow on push or pull request
+# events but only for the master branch
+on:
+  push:
+    branches: [ development ]
+
+jobs:
+  build-documentation:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    # Build the HTML documentation
+    - name: Doxygen Action
+      uses: mattnotmitt/doxygen-action@v1.9.5
+      with:
+          doxyfile-path: ./Doxygenfile
+          working-directory: .
+          enable-latex: true
+
+    # Deploy the HTML documentation to GitHub Pages
+    - name: GH Pages Deployment
+      uses: peaceiris/actions-gh-pages@v3
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        publish_dir: ./doc/html/
+        enable_jekyll: false
+        allow_empty_commit: false
+        force_orphan: true
+        publish_branch: gh-pages

.github/workflows/main.yml

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+# This is a basic workflow to help you get started with Actions
+
+name: CI
+
+# Controls when the workflow will run
+on:
+  # Triggers the workflow on push or pull request events but only for the master branch
+  push:
+    branches: [ development, Test_new_BND_A100]
+  pull_request:
+    branches: [ development, Test_new_BND_A100]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  # This workflow contains a single job called "build"
+  Build_and_CI_Tests:
+    # The type of runner that the job will run on
+    runs-on: [self-hosted, linux, x64, gpu]
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - uses: actions/checkout@v3
+
+      # Runs a single command using the runners shell
+      #- name: Launch of BG_Flood tests
+      #  run: echo Hello, world!
+
+      # Runs a set of commands using the runners shell
+      - name: creation of the bathy and Params files
+        run: |
+          echo "ncols 3" > bathy.asc
+          echo "nrows 3" >> bathy.asc
+          echo "xllcenter -1" >> bathy.asc
+          echo "yllcenter -1" >> bathy.asc
+          echo "cellsize 1" >> bathy.asc
+          echo "nodata_value -9999" >> bathy.asc
+          printf "0.0 0.0 0.0" >> bathy.asc
+          printf "0.0 0.0 0.0" >> bathy.asc
+          printf "0.0 0.0 0.0" >> bathy.asc
+          echo "test = 0;" >> BG_param.txt
+          echo "gpudevice = 0;" >> BG_param.txt
+          echo "bathy = bathy.asc;">>BG_param.txt
+      # Compilation of the code
+      - name: compilation of the code
+        run: make
+      # Running the tests
+      - name: running test 0,  Gaussian hump propagation
+        run: ./BG_Flood
+      - name: running test 1, Vertical discharge in all directions, different grid adaptation
+        run: |
+          sed -i 's/test = 0/test = 1/' BG_param.txt
+          ./BG_Flood
+      - name: running test 2, Gaussian wave - CPU vs GPU
+        run: |
+          sed -i 's/test = 1/test = 2/' BG_param.txt
+          ./BG_Flood
+      - name: running test 3, Reduction algorithm
+        run: |
+          sed -i 's/test = 2/test = 3/' BG_param.txt
+          ./BG_Flood
+      - name: running test 5, Lake at rest
+        run: |
+          sed -i 's/test = 3/test = 5/' BG_param.txt
+          ./BG_Flood
+      - name: running test 6, Mass conservation on slope
+        run: |
+          sed -i 's/test = 5/test = 6/' BG_param.txt
+          ./BG_Flood
+      - name: running test 7, rain mass conservation
+        run: |
+          sed -i 's/test = 6/test = 7/' BG_param.txt
+          ./BG_Flood
+      - name: running test 8, rain input validation
+        run: |
+          sed -i 's/test = 7/test = 8/' BG_param.txt
+          ./BG_Flood
+      - name: running test 9, Test on zone-outputs
+        run: |
+          sed -i 's/test = 8/test = 9/' BG_param.txt
+          ./BG_Flood
+      - name: running test 10, Test on infiltration
+        run: |
+          sed -i 's/test = 9/test = 10/' BG_param.txt
+          ./BG_Flood
+
+      - name: running test 11, Test on Wet/dry instability
+        run: |
+          sed -i 's/test = 10/test = 11/' BG_param.txt
+          ./BG_Flood
+
+      - name: running test 12, Test on calendar time
+        run: |
+          sed -i 's/test = 11/test = 12/' BG_param.txt
+          ./BG_Flood
+
+      - name: running test 13, Test on multi-Bathy / Multi-Roughness input
+        run: |
+          sed -i 's/test = 12/test = 13/' BG_param.txt
+          ./BG_Flood
+
+      - name: running test 14, Test on AOI implementation aa wall bnb
+        run: |
+          sed -i 's/test = 13/test = 14/' BG_param.txt
+          ./BG_Flood   
+      - name: running test 15, Test on flexible time input
+        run: |
+          sed -i 's/test = 14/test = 15/' BG_param.txt
+          ./BG_Flood
+          ./BG_Flood BG_param_test15.txt
+       ##   var=$(ncdump -v h_P0 Test15_zoom2.nc)
+       ## if: echo ${{ ${#var} == 7 }}
+
+

.github/workflows/push_back-up_gitlab.tmp

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+## from https://github.community/t/push-from-action-to-different-remote-repo/17848/2
+
+name: push to gitlab for back-up
+
+on: 
+#  push:
+#    branches: [self-hosted-CI]
+#  pull_request:
+#    branches: [master]
+  workflow_dispatch: 
+
+jobs:
+  repo-sync:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v2
+      with:
+        fetch-depth: '0'
+        ref: 'master'
+    - name: Install SSH key
+      uses: shimataro/ssh-key-action@v2
+      with:
+         key: ${{ secrets.SSH_PRIVATE_KEY }}
+         name: id_rsa # optional
+         known_hosts: ${{ secrets.KNOWN_HOSTS }}
+    - run: |
+        git remote add gitlab git@bitbucket.org:jingzhuyan/new1.git
+        git config --global user.email " ****@***"
+        git config --global user.name "yanjingzhu"
+        git checkout master
+        git push -u gitlab master

.gitignore

@@ -2,3 +2,5 @@ build
 *~
 CMakeSettings.json
 .vs
+*.dll
+*.exe

.travis.yml

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+language: cpp
+
+sudo: enabled
+
+compiler:
+  - gcc
+
+matrix:
+  include:
+    - name: CUDA 9
+      env:
+      - CUDA=9.2.148-1
+      - CUDA_SHORT=9.2
+      - UBUNTU_VERSION=ubuntu1604
+      dist: xenial
+    - name: CUDA 10
+      env:
+      - CUDA=10.1.105-1
+      - CUDA_SHORT=10.1
+      - UBUNTU_VERSION=ubuntu1804
+      dist: bionic
+
+before_install:
+  - INSTALLER=cuda-repo-${UBUNTU_VERSION}_${CUDA}_amd64.deb
+  - wget http://developer.download.nvidia.com/compute/cuda/repos/${UBUNTU_VERSION}/x86_64/${INSTALLER}
+  - sudo dpkg -i ${INSTALLER}
+  - wget https://developer.download.nvidia.com/compute/cuda/repos/${UBUNTU_VERSION}/x86_64/7fa2af80.pub
+  - sudo apt-key add 7fa2af80.pub
+  - sudo apt update -qq
+  - sudo apt install -y cuda-core-${CUDA_SHORT/./-} cuda-cudart-dev-${CUDA_SHORT/./-} cuda-cufft-dev-${CUDA_SHORT/./-}
+  - sudo apt clean
+  - CUDA_HOME=/usr/local/cuda-${CUDA_SHORT}
+  - LD_LIBRARY_PATH=${CUDA_HOME}/lib64:${LD_LIBRARY_PATH}
+  - PATH=${CUDA_HOME}/bin:${PATH}
+
+  - sudo apt-get update
+  - sudo apt-get -y install libnetcdf-dev
+
+before_script:
+  - echo "ncols 3" > bathy.asc
+  - echo "nrows 3" >> bathy.asc
+  - echo "xllcenter -1" >> bathy.asc
+  - echo "yllcenter -1" >> bathy.asc
+  - echo "cellsize 1" >> bathy.asc
+  - echo "nodata_value -9999" >> bathy.asc
+  - printf "0.0 0.0 0.0" >> bathy.asc
+  - printf "0.0 0.0 0.0" >> bathy.asc
+  - printf "0.0 0.0 0.0" >> bathy.asc
+  - echo "test=1">BG_param.txt
+  - echo "gpudevice=-1">>BG_param.txt
+  - echo "bathy=bathy.asc">>BG_param.txt
+script:
+  - make
+  - ./BG_Flood