JOSS paper draft

.github/workflows/draft-pdf.yml

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+on: [push]
+
+jobs:
+  paper:
+    runs-on: ubuntu-latest
+    name: Paper Draft
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+      - name: Build draft PDF
+        uses: openjournals/openjournals-draft-action@master
+        with:
+          journal: joss
+          # This should be the path to the paper within your repo.
+          paper-path: docs/papers/joss/paper.md
+      - name: Upload
+        uses: actions/upload-artifact@v1
+        with:
+          name: paper
+          # This is the output path where Pandoc will write the compiled
+          # PDF. Note, this should be the same directory as the input
+          # paper.md
+          path: docs/papers/joss/paper.pdf

docs/papers/joss/.gitignore

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+*.log
+
+/paper.pdf

docs/papers/joss/paper.bib

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+
+@article{julia-paper,
+  author = {Bezanson, Jeff and Edelman, Alan and Karpinski, Stefan and Shah, Viral B.},
+  title = {Julia: A Fresh Approach to Numerical Computing},
+  journal = {SIAM Review},
+  volume = {59},
+  number = {1},
+  pages = {65-98},
+  year = {2017},
+  doi = {10.1137/141000671}
+}
+
+
+@misc{E3SM,
+    title = {Energy Exascale Earth System Model v2.0},
+    author = {{E3SM} Project, DOE},
+    doi = {10.11578/E3SM/dc.20210927.1},
+    url = {https://doi.org/10.11578/E3SM/dc.20210927.1},
+    howpublished = {[Computer Software] \url{https://doi.org/10.11578/E3SM/dc.20210927.1}},
+    year = {2021}
+}
+
+@Misc{petsc-web-page,
+   Author = "Satish Balay and Shrirang Abhyankar and Mark~F. Adams and Jed Brown
+   and Peter Brune and Kris Buschelman and Lisandro Dalcin and Alp Dener and Victor Eijkhout
+   and William~D. Gropp and Dinesh Kaushik and Matthew~G. Knepley and Dave~A. May
+   and Lois Curfman McInnes and Richard Tran Mills and Todd Munson and Karl Rupp
+   and Patrick Sanan and Barry~F. Smith and Stefano Zampini and Hong Zhang and Hong Zhang",
+   Title  = "{PETS}c {W}eb page",
+   Note   = "https://www.mcs.anl.gov/petsc",
+   Year   = "2020"}
+
+@TechReport{petsc-user-ref,
+   Author = "Satish Balay and Shrirang Abhyankar and Mark~F. Adams and Jed Brown
+   and Peter Brune and Kris Buschelman and Lisandro Dalcin and Alp Dener and Victor Eijkhout
+   and William~D. Gropp and Dinesh Kaushik and Matthew~G. Knepley and Dave~A. May
+   and Lois Curfman McInnes and Richard Tran Mills and Todd Munson and Karl Rupp
+   and Patrick Sanan and Barry~F. Smith and Stefano Zampini and Hong Zhang and Hong Zhang",
+   Title       = "{PETS}c Users Manual",
+   Number      = "ANL-95/11 - Revision 3.13",
+   Institution = "Argonne National Laboratory",
+   Year        = "2020"}
+
+@InProceedings{petsc-efficient,
+   Author    = "Satish Balay and William D. Gropp and Lois C. McInnes and Barry F. Smith",
+   Title     = "Efficient Management of Parallelism in Object Oriented
+                Numerical Software Libraries",
+   Booktitle = "Modern Software Tools in Scientific Computing",
+   Editor    = "E. Arge and A. M. Bruaset and H. P. Langtangen",
+   Pages     = "163--202",
+   Publisher = "Birkhauser Press",
+   Year      = "1997"}
+
+@article{libceed-joss-paper,
+  author       = {Jed Brown and Ahmad Abdelfattah and Valeria Barra and Natalie Beams and Jean Sylvain Camier and Veselin Dobrev and Yohann Dudouit and Leila Ghaffari and Tzanio Kolev and David Medina and Will Pazner and Thilina Ratnayaka and Jeremy Thompson and Stan Tomov},
+  title        = {{libCEED}: Fast algebra for high-order element-based discretizations},
+  journal      = {Journal of Open Source Software},
+  year         = {2021},
+  publisher    = {The Open Journal},
+  volume       = {6},
+  number       = {63},
+  pages        = {2945},
+  doi          = {10.21105/joss.02945}
+}
+
+@misc{libceed-user-manual,
+  author       = {Abdelfattah, Ahmad and
+                  Barra, Valeria and
+                  Beams, Natalie and
+                  Brown, Jed and
+                  Camier, Jean-Sylvain and
+                  Dobrev, Veselin and
+                  Dudouit, Yohann and
+                  Ghaffari, Leila and
+                  Kolev, Tzanio and
+                  Medina, David and
+                  Pazner, Will and
+                  Ratnayaka, Thilina and
+                  Shakeri, Rezgar and
+                  Thompson, Jeremy L and
+                  Tomov, Stanimire and
+                  Wright III, James},
+  title        = {{libCEED} User Manual},
+  month        = dec,
+  year         = 2022,
+  publisher    = {Zenodo},
+  version      = {0.11.0},
+  doi          = {10.5281/zenodo.7480454}
+}
+
+@misc{MFEMlibrary,
+  title = "{MFEM}: {Modular Finite Element Methods Library}",
+  url = "https://mfem.org/",
+  year = "2021",
+  doi = "10.11578/dc.20171025.1248"
+}
+
+@article{mfem-paper,
+  title   = {{MFEM}: A Modular Finite Element Library},
+  author  = {R. Anderson and J. Andrej and A. Barker and J. Bramwell and J.-S. Camier and
+             J. Cerveny V. Dobrev and Y. Dudouit and A. Fisher and Tz. Kolev and W. Pazner and
+             M. Stowell and V. Tomov and I. Akkerman and J. Dahm and D. Medina and S. Zampini},
+  journal = {Computers \& Mathematics with Applications},
+  doi     = {10.1016/j.camwa.2020.06.009},
+  year    = {2020}
+}
+
+@article{dealII92,
+  title     = {The \texttt{deal.II} Library, Version 9.2},
+  author    = {Daniel Arndt and Wolfgang Bangerth and Bruno Blais and
+               Thomas C. Clevenger and Marc Fehling and Alexander V. Grayver and
+               Timo Heister and Luca Heltai and Martin Kronbichler and Matthias Maier and
+               Peter Munch and Jean-Paul Pelteret and Reza Rastak and
+               Ignacio Thomas and Bruno Turcksin and Zhuoran Wang and David Wells},
+  journal   = {Journal of Numerical Mathematics},
+  publisher = {De Gruyter},
+  year      = {2020},
+  volume    = {28},
+  number    = {3},
+  pages     = {131-146},
+  DOI       = {10.1515/jnma-2020-0043},
+  url       = {https://dealii.org/deal92-preprint.pdf}
+}
+
+@article{firedrake,
+    author = {Rathgeber, Florian and Ham, David A. and Mitchell, Lawrence and Lange, Michael and Luporini, Fabio and Mcrae, Andrew T. T. and Bercea, Gheorghe-Teodor and Markall, Graham R. and Kelly, Paul H. J.},
+    title = {Firedrake: Automating the Finite Element Method by Composing Abstractions},
+    year = {2016},
+    issue_date = {September 2017},
+    publisher = {Association for Computing Machinery},
+    address = {New York, NY, USA},
+    volume = {43},
+    number = {3},
+    issn = {0098-3500},
+    url = {https://doi.org/10.1145/2998441},
+    doi = {10.1145/2998441},
+    journal = {ACM Trans. Math. Softw.}
+}
+
+@article{FeniCS,
+    author = {Alnæs, Martin S. and Blechta, Jan and Hake, Johan and Johansson, August and Kehlet, Benjamin and Logg, Anders and Richardson, Chris and Ring, Johannes and Rognes, Marie E. and Wells, Garth N.},
+    title = {The FEniCS Project Version 1.5},
+    year = {2015},
+    volume = {3},
+    number = {100},
+    pages = {9-23},
+    doi = {https://doi.org/10.11588/ans.2015.100.20553},
+    journal = {Archive of Numerical Software}
+}
+
+@software{climate_machine_zenodo,
+  author       = {Climate Modeling Alliance},
+  title        = {ClimateMachine.jl},
+  month        = may,
+  year         = 2020,
+  publisher    = {Zenodo},
+  version      = {0.2.0},
+  doi          = {10.5281/zenodo.5542395},
+  url          = {https://doi.org/10.5281/zenodo.5542395}
+}
+
+@article{TempestRemap1,
+  author          = {Paul A. Ullrich and Mark A. Taylor},
+  journal         = {Mon. Wea. Rev.},
+  title           = {Arbitrary-Order Conservative and Consistent Remapping and a Theory of Linear Maps: Part 1},
+  volume          = {143},
+  year            = {2015},
+  doi             = {10.1175/MWR-D-14-00343.1}
+}
+
+@article{TempestRemap2,
+  author          = {Paul A. Ullrich, Darshi Devendran and Hans Johansen},
+  journal         = {Mon. Weather Rev.},
+  title           = {Arbitrary-Order Conservative and Consistent Remapping and a Theory of Linear Maps, Part 2},
+  volume          = {144},
+  year            = {doi: 10.1175/MWR-D-15-0301.1}
+}