[ENG-7603] MFR infra deps upgrade #378
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* Upgrade "infra" dep-group and another updates that are needed to be updated the same as in WB and not create conflicts on image building. * Update setup.py to create image without errors
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Ticket
https://openscience.atlassian.net/browse/ENG-7603
Purpose
Update dependencies in dep-group “infra”
The dep-group tickets are about updating a batch of dependencies at a time. In the MFR requirements DB, column C is "group". I've tried to group similar dependencies together. When you take on a dep-group ticket, you're trying to upgrade all the tickets in that group to their latest version.
It may turn out that some of the modules in one group break or require changes for a module in another group. That's okay; we'll deal with those on a case-by-case basis. If we have to leave something out or drag something in it, that's fine. We can also break things out into smaller dep-groups with new tickets if that makes sense.
Changes
Update the dependencies infra and some another deps in MFR (that is needed to be the same as in WB) and check whether image is built without errors.
Side effects
Maybe on MFR python3.13 migration we may have some issues like it was with WB with zero bytes buffer reading on file upload.
QA Notes
Deployment Notes